Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3126g00039 ATGCGTCGACCAATGAAGAGGGTGGATTTCTGCAGAGGGAAGAAGGTGGAGGTTTGCAGCAAAGAAGATGGGTTTGTTGGTTCGTATTACGAGGCAACCCTTGTGTCCCACCTTCCCAATGGCCTCTGCGTCGTGCGCTACACGAACCTTCTCGAAGACGACGAATCTCAGCCTCTCACTGAGACCCTTTATCAGAAGGAGCTTCGCCCGTTGCCGCCCAGGGTCCAGGGTTCTGCGTTTTCCCTGTACCAGAAAGTCGATGTTTTCGACAACGATGGTTGGTGGGTTGGTGAGATCACTGGGAGAAGGATAAGTGATTCTCACTACTATGTGTATTTTACTACCACCAATGAAGAGATAGCGTATCCCTATTCTCAGATCAGGGTTCATCATGATTGGGTTAATGGGGATTGGCTTTTGTCCAATTGA 429 0.4942 MRRPMKRVDFCRGKKVEVCSKEDGFVGSYYEATLVSHLPNGLCVVRYTNLLEDDESQPLTETLYQKELRPLPPRVQGSAFSLYQKVDVFDNDGWWVGEITGRRISDSHYYVYFTTTNEEIAYPYSQIRVHHDWVNGDWLLSN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3126g00039 142 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Gabi3126g00039 142 SMART agenet_At_2 78 135 IPR014002 -
Gabi3126g00039 142 SMART agenet_At_2 8 76 IPR014002 -
Gabi3126g00039 142 Pfam Agenet domain 13 73 IPR008395 -
Gabi3126g00039 142 CDD Tudor_Agenet_AtDUF_rpt2_4 84 129 - -
Gabi3126g00039 142 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3126g00039 Gabi-Chr3126 427996 428608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3126g00039 20 140 PHD Transcription Factor Family AT5G58610 27.517 5.74e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3126g00039 - - gmx:121175082 206.068