Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3126g00037 ATGAATTCAAAGAAGCTAGTGATGAGCTCTGAGACTTCAAGTGAAGAAAAAGAAGATGAGACTGAAGCTTATGGGTGCACATTCTGCAGGAGAGGCTTCACAAACGCTCAGGCTTTAGGGGGTCATATGAATATTCATAGGAAAGACAGAGCTAAGGATAAGCAAGTGGCCACAAACTCTACTACTTCACTTCCAAATGAAGAATCCATGGGCGCCCTTACTTTTGTTTCAGAATATCCAGAGTACAAACCCACAAAGCATTACTCCATTTTGGAGTCTCAGAAGAACTTTGAGATGCATCTTCGTCCACGAACACTTATCCAGAGAAACCAACCTCCTAAACCTGTTCATGGCGTTGATTATGAGTTTCATTTCCCAAGGTCTCGACCTATGAATTCGAACCAAGAGCTTCGGGGTGTCGATTTGAGTCTCCAAATCGGTCAAATTCATGTGGATAATAATAATACTCATCAAGTTAGGAGGAGAGGAACTCAGAAAGATAGCGAAGTGGACTTGGAGCTTAGACTTGGCCATGATCCATAA 543 0.4236 MNSKKLVMSSETSSEEKEDETEAYGCTFCRRGFTNAQALGGHMNIHRKDRAKDKQVATNSTTSLPNEESMGALTFVSEYPEYKPTKHYSILESQKNFEMHLRPRTLIQRNQPPKPVHGVDYEFHFPRSRPMNSNQELRGVDLSLQIGQIHVDNNNTHQVRRRGTQKDSEVDLELRLGHDP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3126g00037 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Gabi3126g00037 180 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3126g00037 180 Gene3D Classic Zinc Finger 1 78 - -
Gabi3126g00037 180 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Gabi3126g00037 180 MobiDBLite consensus disorder prediction 155 180 - -
Gabi3126g00037 180 SUPERFAMILY beta-beta-alpha zinc fingers 22 50 IPR036236 -
Gabi3126g00037 180 PANTHER OS07G0101800 PROTEIN 17 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3126g00037 Gabi-Chr3126 388257 388799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3126g00037 24 111 C2H2 Transcription Factor Family AT5G43540 37.500 7.51e-16 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3126g00037 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3126g00037 - - vun:114191365 158.303