Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3126g00004 ATGGATTCATCATCAATCTTCAACTCATCAAATTCCGATTTCTCTTCTGAATCTTCCTCCTTCGGTTCGCCGGAGCAGTTCTCGTGTAACTTCAACGAGAACGATTACCTTCCCTTCAACGAGAACGACCCTGAGGAGATGCTTCTCTATGGCATGATTGCAGACGCCAACAACCACCACCACCACCACCACCTCCAGCAACCCTTTAACACTGGCAAGAGTGTGAAGGAAGAGGAGGTTAGTTCTGAAGAAAACGGCGGCGCCATGAAGGAGGAGAAGTCGTACAGAGGCGTGAGGAAGAGGCCATGGGGGAAGTTTGCGGCTGAGATAAGGGATTCGACTAGGCATGGGATGAGGGTATGGTTGGGAACATTTGATAGTGCTGAAGCTGCAGCTTTGGCTTATGATCAAGCTGCTTTTTCCATGAGGGGTTCTTCTGCTATACTTAACTTCCCTGTTGAGATTGTAAGGGAATCGCTTAGGGAGATGAATTATGGTTCTGAAGATGGGTGTTCCCCTGTTGTTGCTTTGAAGAGAAAGCACTCCTTGAAGAGGAAAATTGGTGTCAAGAAGAATAAAGAAAAAGTTGTTAGTAATAAAAGGGTCGATGATGACAATGACAATGCTGTCGTGTTTGAAGATCTAGGTGCTGATTACTTGGAACAATTGTTGATCTCCTCTGATGAAATTCCTCGTTCTTGGTGA 705 0.4567 MDSSSIFNSSNSDFSSESSSFGSPEQFSCNFNENDYLPFNENDPEEMLLYGMIADANTXHHHHHHLQQPFNTGKSVKEEEVSSEENGGAMKEEKSYRGVRKRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVEIVRESLREMNYGSEDGCSPVVALKRKHSLKRKIGVKKNKEKVVSNKRVDDDNDNAVVFEDLGADYLEQLLISSDEIPRSW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3126g00004 235 MobiDBLite consensus disorder prediction 1 26 - -
Gabi3126g00004 235 MobiDBLite consensus disorder prediction 77 93 - -
Gabi3126g00004 235 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Gabi3126g00004 235 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Gabi3126g00004 235 Gene3D AP2/ERF domain 94 155 IPR036955 GO:0003700|GO:0006355
Gabi3126g00004 235 SUPERFAMILY DNA-binding domain 95 155 IPR016177 GO:0003677
Gabi3126g00004 235 MobiDBLite consensus disorder prediction 60 93 - -
Gabi3126g00004 235 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Gabi3126g00004 235 FunFam Ethylene-responsive transcription factor 2 94 155 - -
Gabi3126g00004 235 CDD AP2 94 154 IPR001471 GO:0003700|GO:0006355
Gabi3126g00004 235 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Gabi3126g00004 235 PRINTS Ethylene responsive element binding protein signature 135 155 IPR001471 GO:0003700|GO:0006355
Gabi3126g00004 235 PANTHER DNA-BINDING DOMAIN 55 226 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3126g00004 Gabi-Chr3126 86421 87321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3126g00004 37 229 AP2-EREBP Transcription Factor Family AT3G23240 60.622 3.14e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3126g00004 AP2 2.2e-14 CL0081