Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3126g00002 ATGCCTTTTTATATACGCAGGTACTTGAATGTGCTTATTTTCCCTCCATTCCGAGTCACAACCGAGTTGACTCAAAAACCAAGCCTAGGGTTCCCATCAAATCCTGCAATCACTGTCAGAATGGATAAAAAAGACTGTGAGGAATTTGCAAAAAGTGCTTCGGATTTCAAGTGTGAGGAATCTGCAAAAAATGCTTCGGATGTCAACTGTAGGAAGCTTCTCCACGCAGTTGATGCACCAATTGCATGCCCAACTCCAGAGAAGAACTTTGAACCCTTGCTTATCAAATCCAAGCAGGCAGAAACTCAGCTTCCAGAAAAATGCAGGACCATTGCAGATTTGTTTAGTCACATGAGCTGTTCACTTAGATTGCTGCATCTGCGTAAAAAATCTCCAACTTTTCAAAATATTAGCAAGCAGGTCGAAGTTCTTGGCAAGAGAAAATTCTCCCATGCCCATCTTGCGCAGATGAAGTATATACTTCCCGAAGGCATACATATAGATAAGGTGTTAGTTCATGATAAGAAGAGCTTGTGTATGAAGCCGGACATGAAGATCACCTTGATATTTGAGGTTGTGGAAGAATACTCCAAAGAATTTGCTGATATGGCTCTTCGCCAATATTTTTGTTCTAGGCTGATTGATTTCTTCAATATGCACCCTGAGGCTCCTGATATTCCGGAGGCCATACTGCCAGAGCCCTTTAGCCAAAGAACTCATAGCTTGATTTGTGAAGCTTTGCCTTTAAATTCTTCAACAGAACTTCCGTCAACTTCCAATCAAATTGAACTGCTGCCTGAGAAACTCCATTTGTATCCATCTTTTCGCAGACATTTTTCTCGGAAGAATGTTGCTGATCAGACAGGAAAGCATCAATGCTTTTCACCCACTAAAACTTCTCTGTCATCCCATGTCTCTGATTGCCTAGATAACCAACGAAGTGAAAGCACATGGCAGAAAGAATGTGCTCCATTACCTGATTGTGTAACTAATCTGAATACAGAAAGAAGGCAGCAGAAGGAATCATTTTCTATGTGTTATCAACCAGGTGTTATAAATACACCAGTGCATAAGATCTGCCCTCCACATTCTGTTTGTTGCAGTAGTTCTAAAAGCCCTGATATGAAAATTGTCTCTTGCGCTGATAGTTTAATGATAGAGACACCTGCCCAGTCAGCACCTGGGAGATTGATGCCCGTTTCTGATGTTAAGCTTCAGAACATGACTACTCAAAAGTCAACATCATGTCCTAAGTCTGCAAAAAGAGTGCTTCACTTTTCGCTCCTGGAAGGCTGTGATGGCTTGGACATTAGACTAGACAAGTTAGAGTCTAGCAGGGCACCGGATGAATTTGTTAGCATCCCTGAATCTAGCAGAGGATGTTCTGAGAATAGCAATTCTTTTGTCCCTGTTGCTCTACCTCAGGAGGTCAAAGAGAGCCTTGGTTATTCTTTTGAGAAAACCAACCAAAATCTAGCTGGTGTAGATGCAGGGAATAAAAAAATTTCATCATTGCTGGATTATGTTAATGTTATTCACTCTATATTTCATTCTGATAAAAGAACTTCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATTATGAACAGCTCGGATTTTGTTGAAATTAGTGAAGTTGAAGAACAGATCGAGTTTCTGGAAAAGTTGGTGCCAGACTGGATTTGCAAGAAGTTGGTTTCTAGTGGAGATATTATTTACTGGTGGGTTAATTTCTGTCTACTGTTGATTAGATCTTTGTGCTTTTATAGTATTAGTATCTTCTACGGATGTGAGCATATCTGA 1803 0.4038 MPFYIRRYLNVLIFPPFRVTTELTQKPSLGFPSNPAITVRMDKKDCEEFAKSASDFKCEESAKNASDVNCRKLLHAVDAPIACPTPEKNFEPLLIKSKQAETQLPEKCRTIADLFSHMSCSLRLLHLRKKSPTFQNISKQVEVLGKRKFSHAHLAQMKYILPEGIHIDKVLVHDKKSLCMKPDMKITLIFEVVEEYSKEFADMALRQYFCSRLIDFFNMHPEAPDIPEAILPEPFSQRTHSLICEALPLNSSTELPSTSNQIELLPEKLHLYPSFRRHFSRKNVADQTGKHQCFSPTKTSLSSHVSDCLDNQRSESTWQKECAPLPDCVTNLNTERRQQKESFSMCYQPGVINTPVHKICPPHSVCCSSSKSPDMKIVSCADSLMIETPAQSAPGRLMPVSDVKLQNMTTQKSTSCPKSAKRVLHFSLLEGCDGLDIRLDKLESSRAPDEFVSIPESSRGCSENSNSFVPVALPQEVKESLGYSFEKTNQNLAGVDAGNKKISSLLDYVNVIHSIFHSDKRTSITKEELLQKIIMNSSDFVEISEVEEQIEFLEKLVPDWICKKLVSSGDIIYWWVNFCLLLIRSLCFYSISIFYGCEHI 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3126g00002 600 SUPERFAMILY "Winged helix" DNA-binding domain 96 235 IPR036390 -
Gabi3126g00002 600 Gene3D - 495 585 IPR038090 -
Gabi3126g00002 600 PANTHER DNA REPLICATION FACTOR CDT1 76 574 IPR045173 GO:0003677|GO:0030174|GO:0071163
Gabi3126g00002 600 CDD Cdt1_m 96 242 IPR014939 -
Gabi3126g00002 600 SMART CDT1_2 104 233 IPR014939 -
Gabi3126g00002 600 Pfam DNA replication factor CDT1 like 104 168 IPR014939 -
Gabi3126g00002 600 Pfam DNA replication factor Cdt1 C-terminal domain 500 561 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3126g00002 Gabi-Chr3126 35391 39047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3126g00002 509 572 Core DNA Replication Machinery Family AT3G54710 54.688 1.97e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3126g00002 K10727 - gmx:102670055 657.521