LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3125g00001	ATGGAGCAGCGAAAGCTTGTGGTTTTGGGCATCCCGTGGGACGTTGATACCGAAGGCTTGAAAGAATATATGAGCAAGTTTGGTGATCTGGAAGATTGTATTGTTATGAGGGAACGTTCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTACATCAGTGGAGGATGCTAAGAATGTATTATCCAGTGAACACATGCTTGGTAACAGGATGCTTGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCTCCAGTCAAAAAAGTTACTAGAATCTTTGTGGCCAGAATCCCACCATCAGTATCAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGAGATAACAGATTTATACATGCCAAAGGATCAAGGATCAAAAGCGCATCGTGGAATTGGTTTTATCACTTTTGCAAGTGCAGATTCTGTAGAGAATTTGATGACAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCAACACCTAAGGAAGATGACTTCAAGCCAATTGGCAGAATGTCACACGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGTTCAATTTATGGAAGGGGAGAACCTGCTCGTGGAATGGGCAAAAAGATTTTTGTTGGTCGTCTTCCCCAGGAGGCAACCAGTGAAGATCTTCGCCAGTATTTTGGAAGATTTGGTCGTATATTAGATGTTTATGTTCCCAGGGATGCTAAGAGATCAGGTCATAGAGGATTTGGGTTTGTGACTTTTGCTGAAGATGGTGTGGCAGATCGTGTCTCTCGAAGGTCTCATGAGATATGCGGACATCAGGTGGCCATAGATTCAGCCACACCTCTTGATGATGCAGGGCCCAGTGGGAATTTTATGTTGAATAGCATGGATTCTTTTGGGGGATTTGGCGGTCCTGTTCGAACTTATGGGAGGATGTATGGTAGCCTAGACTTTGATGATTGGGGTTATGGAATTCCCAGTGGGAGACCATCAAGGGCAGATTGGAGGTATAGACCATACTAG	1080	0.4426	MEQRKLVVLGIPWDVDTEGLKEYMSKFGDLEDCIVMRERSTGRSRGFGYVTFTSVEDAKNVLSSEHMLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVSEATFRSHFEKYGEITDLYMPKDQGSKAHRGIGFITFASADSVENLMTETHELGGSAVVVDRATPKEDDFKPIGRMSHGGYGAYNAYISATTRYAALGAPTLYDHPGSIYGRGEPARGMGKKIFVGRLPQEATSEDLRQYFGRFGRILDVYVPRDAKRSGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDDAGPSGNFMLNSMDSFGGFGGPVRTYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3125g00001	359	FunFam	heterogeneous nuclear ribonucleoprotein 1	84	176	-	-
	Gabi3125g00001	359	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	224	300	IPR000504	GO:0003723
	Gabi3125g00001	359	SUPERFAMILY	RNA-binding domain, RBD	3	85	IPR035979	GO:0003676
	Gabi3125g00001	359	FunFam	RNA-binding family protein isoform 1	221	304	-	-
	Gabi3125g00001	359	SUPERFAMILY	RNA-binding domain, RBD	224	323	IPR035979	GO:0003676
	Gabi3125g00001	359	Gene3D	-	222	304	IPR012677	-
	Gabi3125g00001	359	PANTHER	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	223	318	-	-
	Gabi3125g00001	359	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	92	168	IPR000504	GO:0003723
	Gabi3125g00001	359	FunFam	heterogeneous nuclear ribonucleoprotein 1	2	83	-	-
	Gabi3125g00001	359	SMART	rrm1_1	93	164	IPR000504	GO:0003723
	Gabi3125g00001	359	SMART	rrm1_1	225	296	IPR000504	GO:0003723
	Gabi3125g00001	359	SMART	rrm1_1	5	76	IPR000504	GO:0003723
	Gabi3125g00001	359	Gene3D	-	84	174	IPR012677	-
	Gabi3125g00001	359	Gene3D	-	1	83	IPR012677	-
	Gabi3125g00001	359	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	226	280	IPR000504	GO:0003723
	Gabi3125g00001	359	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6	68	IPR000504	GO:0003723
	Gabi3125g00001	359	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	94	151	IPR000504	GO:0003723
	Gabi3125g00001	359	SUPERFAMILY	RNA-binding domain, RBD	89	187	IPR035979	GO:0003676
	Gabi3125g00001	359	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	4	80	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3125g00001	Gabi-Chr3125	8600	16619	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3125g00001	5	293	Eukaryotic Initiation Factors Gene Family	AT2G23350	24.407	5.45e-12	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3125g00001	K14411		-	qsa:O6P43_024629	669.077