Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3124g00001 ATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGCAAGTTTGAAGAAGTTCATCATGATGAGCTTTCAACTGAATTGTACTTTACTAATGTTACCCTATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATGATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAAGAGCAAGTTGTGGGCAGTTCCAATTCATCAACAAGGATCATTGGCTGGGATTGCGAAGGGGTCTCGTGATGTGATGGCGCTTTTTGGCGCCATTACGTTGCGAGAAAGCTTCGGGGTTCGATTTACTTTCTTGAAAATTGTGTCTTGCGGCAAAAATCGGATTTTGCACACTGGGTACGTGATCAACACAAAGATTGGTGTTGCGTTGGTACTTTACTGA 1257 0.4447 MGRKNKIEDDYVTGVRIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGKFEEVHHDELSTELYFTNVTLYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHDVCVWIDALANAISHVRISEPKKSKLWAVPIHQQGSLAGIAKGSRDVMALFGAITLRESFGVRFTFLKIVSCGKNRILHTGYVINTKIGVALVLY 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3124g00001 418 FunFam Maternal embryonic leucine zipper kinase 3 280 - -
Gabi3124g00001 418 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gabi3124g00001 418 ProSiteProfiles Protein kinase domain profile. 11 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3124g00001 418 SUPERFAMILY Protein kinase-like (PK-like) 7 296 IPR011009 -
Gabi3124g00001 418 Gene3D Transferase(Phosphotransferase) domain 1 3 295 - -
Gabi3124g00001 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi3124g00001 418 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 285 - -
Gabi3124g00001 418 Pfam Protein kinase domain 12 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3124g00001 418 SMART serkin_6 11 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3124g00001 Gabi-Chr3124 30052 35885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3124g00001 11 259 EF-hand Containing Proteins AT4G04720 42.366 1.65e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3124g00001 Pkinase 2.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3124g00001 - - gmx:100812729 496.123