Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3123g00005 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATCATTTGATCTATGGACAGCATCGTTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGACATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCATAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATCATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGTCATACATAACATAGAAATTACATTCGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGCGCTGTAGCGAAACTGATTGCAAAAGAGGGAAAATCGGCCACGTTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCACGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAAAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 837 0.4349 MAIHLYKTSTPSTRNGAVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIITIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLKSTSTDMPLGTVIHNIEITFGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGKRSRKRNKYSDNLILRRRSK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3123g00005 278 MobiDBLite consensus disorder prediction 262 278 - -
Gabi3123g00005 278 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gabi3123g00005 278 FunFam 50S ribosomal protein L2 198 278 - -
Gabi3123g00005 278 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 13 278 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gabi3123g00005 278 SMART Ribosomal_L2_C_2 122 255 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gabi3123g00005 278 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3123g00005 278 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
Gabi3123g00005 278 MobiDBLite consensus disorder prediction 228 278 - -
Gabi3123g00005 278 PANTHER RIBOSOMAL PROTEIN L2 36 277 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gabi3123g00005 278 Gene3D - 116 198 IPR014722 -
Gabi3123g00005 278 Gene3D - 1 112 IPR012340 -
Gabi3123g00005 278 Gene3D Ribosomal protein L2, domain 3 199 277 IPR014726 -
Gabi3123g00005 278 Pfam Ribosomal Proteins L2, C-terminal domain 123 253 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gabi3123g00005 278 FunFam 50S ribosomal protein L2, chloroplastic 116 198 - -
Gabi3123g00005 278 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Gabi3123g00005 278 ProSitePatterns Ribosomal protein L2 signature. 220 231 IPR022671 GO:0003735|GO:0005840|GO:0006412
Gabi3123g00005 278 SUPERFAMILY Translation proteins SH3-like domain 125 275 IPR008991 -
Gabi3123g00005 278 NCBIfam 50S ribosomal protein L2 3 277 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Gabi3123g00005 278 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Gabi3123g00005 278 Hamap 50S ribosomal protein L2 [rplB]. 1 277 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3123g00005 Gabi-Chr3123 27051 29408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3123g00005 51 237 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 35.961 1.29e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3123g00005 K02886 - csv:3429293 540.036