Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3120g00041 ATGGCTGAGCTACCAAGCTCAGAGACAGAGACAAATACCAACTGCTATACACCATCATCATCGCCATGTGTACCAATCACCGCTAACACTACAACCCAACACTCTTACTCGGAGCCCCGATTACCCGACCCGGATCAGAAGGGGCCCAAGCGGCCCAGAGATAGCAGTAGCAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGGCCTGGGGCAAGTGGGTATCCGAAATCCGCGAGCCTCGCAAGAAGAACCGGATCTGGCTTGGCACCTTCGCCACCCCGGAGATGGCCGCGCGAGCCCATGACGTGGCGGCGCTCGCCATCAAAGGCAGCTCCGCCATCCTCAACTTCCCCGAACTCGCCGGTTCACTGCCCCGACCCGATTCTAACTCGCCCCGAGATGTTCAAGCCGCCGCCGCCAAAGCCGCTACCGTCGAGGTTTTCGAACCCCAAACGAAGTCGTCGCGTCGTTCCTCTTCTTCTTCTTCTTCTTCGTCGTCATCGTCGTCGCTGTCTCAGTCTTCGTCTTCATCGTCATTGGCGGTGTCCTCCGGCAACCCTTCAACCCCAGAGGAGCTGGGTGAAATAGTGGAGCTGCCACCTTTAGGAACGAGTTTCGAATTACCCGACCCGAGTAAAGAGTTCGTGTTTTTCGACCCGGGTGATGGGTGGCCCTATCCTCACCCTTGGTATCACAGCATTTATGATGACAGGGACTGTGGGGGGTATTTTATTGGGGATCAGATTTCAATGCCGGACTCAGAAAATATGATTCTTTCTGGCTTTGAGGGTTCATTGTGGCAGCATTAA 810 0.5568 MAELPSSETETNTNCYTPSSSPCVPITANTTTQHSYSEPRLPDPDQKGPKRPRDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGSSAILNFPELAGSLPRPDSNSPRDVQAAAAKAATVEVFEPQTKSSRRSSSSSSSSSSSSSLSQSSSSSSLAVSSGNPSTPEELGEIVELPPLGTSFELPDPSKEFVFFDPGDGWPYPHPWYHSIYDDRDCGGYFIGDQISMPDSENMILSGFEGSLWQH 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3120g00041 269 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Gabi3120g00041 269 MobiDBLite consensus disorder prediction 148 190 - -
Gabi3120g00041 269 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Gabi3120g00041 269 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Gabi3120g00041 269 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Gabi3120g00041 269 MobiDBLite consensus disorder prediction 1 39 - -
Gabi3120g00041 269 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Gabi3120g00041 269 MobiDBLite consensus disorder prediction 125 193 - -
Gabi3120g00041 269 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 203 - -
Gabi3120g00041 269 MobiDBLite consensus disorder prediction 40 61 - -
Gabi3120g00041 269 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Gabi3120g00041 269 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Gabi3120g00041 269 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Gabi3120g00041 269 MobiDBLite consensus disorder prediction 1 62 - -
Gabi3120g00041 269 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3120g00041 Gabi-Chr3120 448505 449664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3120g00041 26 235 AP2-EREBP Transcription Factor Family AT5G25810 56.872 7.27e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3120g00041 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3120g00041 K09286 - qsa:O6P43_003984 313.153