Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3120g00031 ATGGATGACCTTAATGTTATACTGTCAGAGACCAACAACAATATTGTGGTCATGCCGCTGCCATCGTCGACAACGGTGTCAACTTCCAACAATCCCATAGATTTTGAAGCTTTTTTTGATCTCGACGAGGCTCTTGCGATGACAGGAGAATCACGCCTCCCATTTGTGGCGTGGAAGACCTTCGTTTCCAACTTACCGGCGGTTAACGACGTCAAGGACGATGATGTTTGTTCCGTTTGCATGGAAGGCTTTGACCACCACAAATCAGGTGGTGGAAACAAACGAGTCCCATGCGGTCACGTGTACCACTCAAACTGCATAACCGTCTGGCTCGAGCACTGCAATTCTTGCCCGCTTTGCCGCCGCCATGTCTCCCTTCAGCTCTAA 387 0.4961 MDDLNVILSETNNNIVVMPLPSSTTVSTSNNPIDFEAFFDLDEALAMTGESRLPFVAWKTFVSNLPAVNDVKDDDVCSVCMEGFDHHKSGGGNKRVPCGHVYHSNCITVWLEHCNSCPLCRRHVSLQL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3120g00031 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 53 123 - -
Gabi3120g00031 128 Pfam Ring finger domain 76 121 IPR001841 -
Gabi3120g00031 128 SMART ring_2 77 120 IPR001841 -
Gabi3120g00031 128 ProSiteProfiles Zinc finger RING-type profile. 77 121 IPR001841 -
Gabi3120g00031 128 SUPERFAMILY RING/U-box 70 127 - -
Gabi3120g00031 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 127 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3120g00031 Gabi-Chr3120 358716 359102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3120g00031 76 121 C3H Transcription Factor Family AT3G60080 52.174 1.65e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3120g00031 K22378 - gmx:102669154 151.754