Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3120g00019 | ATGGGGAGAGCCACAAGGTGGTTGAAGAGCTTGTTTGGCATAAAGAGAGACAGAGAGCGCAAAGAAAATTCGAATTCCGGCACCAAAAAGAGAGATTCCAGAGGCTTATGTCATAATCCAGCTACCATACCACCAAACATTTCACCCGCAGAGGCTGCTTGGCTTCAATCCTTCTACTCAGAAACAGAGAAGGAACAGAACAAGCACGCCATTGCAGTAGCTGCAGCCACGGCGGCAGCCGCAGATGCTGCAGTGGCTGCGGCTCAGGCTGCTGTGGCAGTTGTTAGGCTAACCAGCCGTGGCAGAGACACCATGTTTGGTGGTGGACGTGAGAGTTTGGCTGCTGTCAAGATTCAAATAGTATTTAAGGGATACTTGGCAAGGAAGGCATTGAAAGCCTTAAAAGGATTGGTGAAGTTACAAGCGCTTGTGAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACTTTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCAACAGTAAGGTCTCAGAAATCTCGCGTGCTCATGACTACAAAGAATGAAGCATATAGGTTTCAGACACAAGCAAGAAGATCCATGGAGAGGTTTGATGACACTAGGAGTGAGAACACTGCTCCAATACACAGCAGAAGGCTAACATCCTCTTTTGATGCCACAATGACTAACACTAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAGTGGACACTGGTAGGCCTAATAAGTCAAGGTCTCGCAGGAGCAACACTTCAATGTCAGATTTTGGCGATGACCCATTATTTCCTCTCCCAATTCCATGTCGTACACCTGCTAATTTATCCATACAAGATCACTGGAATTTCCATGAGTCAGATTGGGGTTTAACAGGGGAAGAATGCAGGTTCTCTACAGCACAGAGCACTCCACGCTTCACCAATTCTTGTAGTTGTGGGTCTGTTGCCCCTTCAACACCTAAAAGCGTTTCCACTGATGACTTCTTACGTGGGCAATATGGCAATTTTCCAAATTATATGGCAAACACTCAGTCTTTCAAGGCCAAATTGAGGTCTCATAGTGCTCCAAAGCAACGCCCAGAACCAGGTCCAAAGAAGAGGCTTTCCCTCAATGAGATGATGGAATCAAGGAGTAGTTTAAGTGGGGTTCGAATGCAGAGGTCTTGCTCACAGATTCAGGAAGCCATTAATTTTAAGAATGCTGTGATGGGTAAGCTTGAGAGGTCCACAGAATTTGGTAGGGAAACAGACAAAAACTTCTCCAACCAGATAAAGTGGTGA | 1284 | 0.4603 | MGRATRWLKSLFGIKRDRERKENSNSGTKKRDSRGLCHNPATIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSRGRDTMFGGGRESLAAVKIQIVFKGYLARKALKALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQKSRVLMTTKNEAYRFQTQARRSMERFDDTRSENTAPIHSRRLTSSFDATMTNTNSVDGSPKIVEVDTGRPNKSRSRRSNTSMSDFGDDPLFPLPIPCRTPANLSIQDHWNFHESDWGLTGEECRFSTAQSTPRFTNSCSCGSVAPSTPKSVSTDDFLRGQYGNFPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLSLNEMMESRSSLSGVRMQRSCSQIQEAINFKNAVMGKLERSTEFGRETDKNFSNQIKW | 427 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3120g00019 | 427 | MobiDBLite | consensus disorder prediction | 304 | 326 | - | - | |
| Gabi3120g00019 | 427 | MobiDBLite | consensus disorder prediction | 193 | 263 | - | - | |
| Gabi3120g00019 | 427 | Pfam | Protein of unknown function (DUF4005) | 304 | 383 | IPR025064 | - | |
| Gabi3120g00019 | 427 | ProSiteProfiles | IQ motif profile. | 135 | 162 | IPR000048 | GO:0005515 | |
| Gabi3120g00019 | 427 | SMART | iq_5 | 133 | 154 | IPR000048 | GO:0005515 | |
| Gabi3120g00019 | 427 | SMART | iq_5 | 110 | 132 | IPR000048 | GO:0005515 | |
| Gabi3120g00019 | 427 | MobiDBLite | consensus disorder prediction | 15 | 42 | - | - | |
| Gabi3120g00019 | 427 | Pfam | IQ calmodulin-binding motif | 114 | 132 | IPR000048 | GO:0005515 | |
| Gabi3120g00019 | 427 | Pfam | IQ calmodulin-binding motif | 138 | 152 | IPR000048 | GO:0005515 | |
| Gabi3120g00019 | 427 | MobiDBLite | consensus disorder prediction | 209 | 233 | - | - | |
| Gabi3120g00019 | 427 | MobiDBLite | consensus disorder prediction | 15 | 36 | - | - | |
| Gabi3120g00019 | 427 | Gene3D | - | 109 | 162 | - | - | |
| Gabi3120g00019 | 427 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 376 | - | - | |
| Gabi3120g00019 | 427 | ProSiteProfiles | IQ motif profile. | 111 | 139 | IPR000048 | GO:0005515 | |
| Gabi3120g00019 | 427 | MobiDBLite | consensus disorder prediction | 193 | 208 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3120g00019 | Gabi-Chr3120 | 231437 | 233016 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3120g00019 | 1 | 386 | IQD Protein Family | AT3G16490 | 52.538 | 1.23e-97 | 296 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3120g00019 | - | - | gmx:100800892 | 582.022 |