Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3120g00018 ATGTCAAATTTGCATTCTATTTTCTATGTTCTAGTAGTTCTTCTTTTTCTGCAAAATCCAAATGCGACACGATGCCATACCAAGGGAATTCGTCTTCGACCAAGGGGTTCTGAAGGGAACGTGACATTGACCAATATGACCCGAGTCCAATTTTCAGAACAACAATTCATGAAATGGGTGAGATTTGTAGGTGGCCTCAGACACACTGTCTTTGGGACAGCCAAGAATAAGCTTTTTCCTTCTTACAATTTGCATGTTTCTAAGAACCCGGGTAAAGCAGGTTTTTCATCAATTCAAGAAGCCATTGATTCTCTTCCATTCATCAATCTAGTAAGAGCGGTCATTAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACCATACAAGGAGCAGGCGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACTCTTGGGCCAAGAGGCCAGCCACTGGGAACCTATGGTTCTGCAACATTTGCAGTGAACTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTACCCCGGTTCCAGCACCAGGAGCAGTCGGAAAGCAAGCAGTGGCATTAAGAATTTCAGCAGATACAGCAATATTCCTAGGCTGCAAATTCTTAGGAGCACAGGACACACTATATGATCATGTGGGTAGGCATTACTACAAGGATTGTTATATTGAAGGCTCTGTTGATTTCATATTCGGCAACGCTCTCTCTCTGTTTGAGGGATGTCACGTGCATGCCATAGCGCAATATGTTGGGGCCCTAACAGCACAAGGAAGGAGCAGTCTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGTAAAGTCACGGGCTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGTGTTGTCTTTGCTTACACTTACATGGATAATATCATCATTCCCAAAGGCTGGTATAACTGGGGCGATCCTAACCGTGAAATGACTGTATTCTATGGTCAGTACAAGTGCACAGGACCAGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCAAGGGAGCTCACCGATGAGGAAGCTAAACCATTTATTTCACTTAATTATATTGATGGGTCTGAATGGATCAAAATTCTTTTTTGA 1155 0.4346 MSNLHSIFYVLVVLLFLQNPNATRCHTKGIRLRPRGSEGNVTLTNMTRVQFSEQQFMKWVRFVGGLRHTVFGTAKNKLFPSYNLHVSKNPGKAGFSSIQEAIDSLPFINLVRAVIKVHAGVYTEKVNIPPLKSFITIQGAGADKTIVQWGDTAQTLGPRGQPLGTYGSATFAVNSPYFIAKNITFKNTTPVPAPGAVGKQAVALRISADTAIFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYVGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFISLNYIDGSEWIKILF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3120g00018 384 ProSitePatterns Pectinesterase signature 2. 239 248 IPR033131 -
Gabi3120g00018 384 Pfam Pectinesterase 90 376 IPR000070 GO:0030599|GO:0042545
Gabi3120g00018 384 SUPERFAMILY Pectin lyase-like 80 382 IPR011050 -
Gabi3120g00018 384 Gene3D - 81 383 IPR012334 -
Gabi3120g00018 384 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 81 381 - -
Gabi3120g00018 384 FunFam Pectinesterase 80 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3120g00018 Gabi-Chr3120 225053 228346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3120g00018 91 380 Carbohydrate Esterase AT5G47500 50.859 1.30e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3120g00018 K01051 - gmx:100802832 686.411