Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3120g00010 ATGGACAAGGGTTGGATTCGGACTTTTCTCATCCTTCTCCATCTAAATGCAGCAAAAGCTGCCATTGGTGTCGGTGGCATAGGTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTATTGGCAATGGTGGGGCTAACAGCCCAGGGCCCTCGGGATCTTCAGTGCCAAAGCTGGATGGTGCTTACAAAGCTCTTCAGGCGTGGAAATCTGCAATTACTGACGACCCATTGAAGATTCTAGATAGCTGGGTTGGTTCTAATGTTTGTTCTTATAAAGGGGTGTTTTGTGCAAATCCTGAGGATGCAAATGGAATTGCAGTGTCAACTGCAACTGGCCCTGTTGTTGTTGCAGGAATAGATCTCAACCATGCAAATCTCCAAGGAACTCTTGTCAAAGAGCTCTCTTTGCTTGCTGATATTACTCTTCTCCACCTCAACAGTAATAGATTTACTGGTACAGTTCCTGATACATTCAAAGACCTCACCTCTCTGGAAGAGTTAGACCTCAGTAACAACCAACTTTCAGGTCCTTTCCCCACTGTTATTTTAAACATGCCAAGCCTCATCTACTTGGACCTCAGATTCAACTACTTCTCTGGGGCACTTCCTGAACAACTTTTCAATAAGAAACTGGATGCTATATTTCTCAACAACAATCAATTTGGAGGTGAAATTCCACAGAACTTGGGTAATTCCCCAGCATCAGTGATAAATTTAGCCAACAACAAGTTCAGTGGAAACATCCCAGCAAGTTTTGGCTTCATGAGTTCTAAACTAAAGGAGATTCTCTTCCTCAATAACCAGTTAACAGGTTGCATTCCTGAAGGGGTGGGGATCTTAACGGAGATGCAAGTTTTGGATGTGAGCTTCAATTCACTCATGGGTCATTTGCCAGACACAATATCTTGCTTGCAAGATATAGAGGTTCTCAATTTGGCACATAACAAGCTTTCAGGAGAATTATCTGATGTGATATGCTCTTTGAGAAGCCTAGTAAATTTAACTGTTGCTTACAATTTCTTTTCTGGGTTCAGCCAAGAATGCTCAAGGCTTTTCAATGTGGGCTTTGATTTCTCAGATAATTGCATTCCTGGAAGAGACATGCAAAGACCTCCACCAGAATGCTCTATAATCCCAGGTGGTAGCCTCAATTGTCTAAGAATCCCTACTCCAAAACCTCTTATTTGTAGTGCACTGGCTGCTGCAAGTGCCTCTGAACACCCAAATCACCGATCATCATCTCCCTGA 1248 0.4319 MDKGWIRTFLILLHLNAAKAAIGVGGIGGVGVGVGVGVGIGNGGANSPGPSGSSVPKLDGAYKALQAWKSAITDDPLKILDSWVGSNVCSYKGVFCANPEDANGIAVSTATGPVVVAGIDLNHANLQGTLVKELSLLADITLLHLNSNRFTGTVPDTFKDLTSLEELDLSNNQLSGPFPTVILNMPSLIYLDLRFNYFSGALPEQLFNKKLDAIFLNNNQFGGEIPQNLGNSPASVINLANNKFSGNIPASFGFMSSKLKEILFLNNQLTGCIPEGVGILTEMQVLDVSFNSLMGHLPDTISCLQDIEVLNLAHNKLSGELSDVICSLRSLVNLTVAYNFFSGFSQECSRLFNVGFDFSDNCIPGRDMQRPPPECSIIPGGSLNCLRIPTPKPLICSALAAASASEHPNHRSSSP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3120g00010 415 FunFam Leucine-rich repeat receptor protein kinase EMS1 248 347 - -
Gabi3120g00010 415 SUPERFAMILY L domain-like 65 352 - -
Gabi3120g00010 415 PRINTS Leucine-rich repeat signature 164 177 - -
Gabi3120g00010 415 PRINTS Leucine-rich repeat signature 304 317 - -
Gabi3120g00010 415 Pfam Leucine rich repeat N-terminal domain 62 96 IPR013210 -
Gabi3120g00010 415 Gene3D Ribonuclease Inhibitor 233 353 IPR032675 -
Gabi3120g00010 415 Gene3D Ribonuclease Inhibitor 61 232 IPR032675 -
Gabi3120g00010 415 FunFam Leucine-rich repeat extensin-like protein 1 62 231 - -
Gabi3120g00010 415 SMART LRR_typ_2 185 209 IPR003591 -
Gabi3120g00010 415 SMART LRR_typ_2 161 184 IPR003591 -
Gabi3120g00010 415 SMART LRR_typ_2 280 304 IPR003591 -
Gabi3120g00010 415 SMART LRR_typ_2 328 351 IPR003591 -
Gabi3120g00010 415 SMART LRR_typ_2 137 160 IPR003591 -
Gabi3120g00010 415 Pfam Leucine rich repeat 141 197 IPR001611 GO:0005515
Gabi3120g00010 415 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 52 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3120g00010 Gabi-Chr3120 149766 151013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3120g00010 56 376 Leucine-rich Repeat extension Gene Families AT3G24480 52.648 4.99e-108 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3120g00010 - - gmx:100786358 629.787