Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3120g00009 ATGAAGATCGAGGAATTGGACGATGCGGAGTGTAGTAGGGATGAAGAAGAGGAGAAGTACGAGAGGCAGATTGTGAGGGTTGATGCAAAGAGAGCGTTGGTCGGAGCAGGTGCACGGATCCTGTTTTATCCGACACTTTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAGTTGATGAGTTTTTATTGTTGGGCGCAGTCCCGTTCCCCAAACATGTTCCTCACTTGAAGGAGCTTGGTGTGGGTGGTGTAATTACTCTGAATGAACCCTATGAAACTTTGGTGCAATCGTCATTGTATCATGCTCATGGAATTGAACATTTGGTAATTCCCACAAGGGATTATCTGTTTGCCCCCTCATTTGTGGATATCAGCCGGGCTGTGCAGTTCATTCATCAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGGAGGAGTACGACAGTTGTGCTTTGTTATCTGGTTGAATACAAGCACATGACACCTGCTGCTGCCCTGGAATATGTGCGTTCTCAAAGACCTAGAGTTCTACTAGCACCGTCACAATGGAAGGCTGTTCAAGACTATAACAAGCGCAGAACTTCTCCTTTACCACACTCTCCCTCTGCGGACACAGTTCTTATAACCAAAGATGATCTTGAAGGCTATCATAGCACATGCGATGCTAGTATGGAGCTGGCCATTGTTCCTAAAGTGCAAAAGACTAAGCCCATGATAGCAAGACTATCTTGCCTGTTTGCATCCTTAAAAGTATCGGGTAGTTGTGTACCAGAGGCAAGGCGGCTGCCAGTTTCTGAGTCACGTGCTTGCTAA 852 0.4624 MKIEELDDAECSRDEEEEKYERQIVRVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQVDEFLLLGAVPFPKHVPHLKELGVGGVITLNEPYETLVQSSLYHAHGIEHLVIPTRDYLFAPSFVDISRAVQFIHQNATCGKTTYVHCKAGRGRSTTVVLCYLVEYKHMTPAAALEYVRSQRPRVLLAPSQWKAVQDYNKRRTSPLPHSPSADTVLITKDDLEGYHSTCDASMELAIVPKVQKTKPMIARLSCLFASLKVSGSCVPEARRLPVSESRAC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3120g00009 283 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 261 - -
Gabi3120g00009 283 Pfam Dual specificity phosphatase, catalytic domain 82 204 IPR000340 GO:0008138|GO:0016311
Gabi3120g00009 283 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 55 204 IPR029021 -
Gabi3120g00009 283 Gene3D Protein tyrosine phosphatase superfamily 61 208 IPR029021 -
Gabi3120g00009 283 ProSiteProfiles Dual specificity protein phosphatase domain profile. 61 208 IPR020422 GO:0006470|GO:0008138
Gabi3120g00009 283 CDD PTPMT1 61 205 IPR044596 GO:0004721
Gabi3120g00009 283 FunFam Dual specificity phosphatase domain protein 61 208 - -
Gabi3120g00009 283 SMART dsp_5 64 205 IPR020422 GO:0006470|GO:0008138
Gabi3120g00009 283 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Gabi3120g00009 283 Coils Coil 6 26 - -
Gabi3120g00009 283 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 197 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3120g00009 Gabi-Chr3120 124882 127423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3120g00009 23 263 Protein tyrosine phosphatase (PTP) family AT2G35680 53.737 8.17e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3120g00009 - - gmx:100817410 522.316