Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3120g00008 ATGAATAGGATCAGCAACTTGAGTTCTGTTAGCAGCTCTGATTTCATAGATGCAAAGCTTGGAGAGCATCAATTGTGTGGATCCAAACAGTGCCCCAGTTGTGGACACAAGTTTGAAGGGAAACCGGACTGGCTAGGTCTACCAGCAGGAGTGAAGTTTGATCCAACGGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTAGAGGCAAGGAATATGAAATCACACCCTTTGATAGATGAGTTCATTCCTACTATTGAAGGAGAAGATGGGATCTGTTATACGCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGCTTGAGCAGACACTTCTTCCACAGACCTTCAAAGGCGTATACAACAGGGACACGGAAGAGAAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACGCGATGGCACAAGACTGGTAAGACCAGACCAGTAACCGTGAATGGCAAGCAAAAGGGGTGCAAGAAAATTCTAGTCCTCTATACCAATTTCGGGAAGAACAGAAAACCAGAAAAGACCAATTGGGTGATGCACCAATACCACCTGGGCCAGCTTGAAGAAGAGAAAGAAGGAGAGCTTGTGGTATCAAAAATATTCTACCAAACTCAGCCAAGGCAATGCAATTGGGCTGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAATGGCAGAAGAGACAGTGGAAGCGGTAGTTGTTCATCTAAGGAAATAGTTACTCACAGGGATGAGATGTCTGTTGTCGTTGGGGTCCCTCCAATAACAAACTTCACCCCTGCCATGGATATTCAACAGCTAAAGTCCAACCATTACAGCTTCATCCCATTCACAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACAGCAAGAGAATTGCAAGCATCGGGCTCATGCCAAGAAGTACATGAACAACAGGAGCCACACCATGTAACACATCAACAACAACATCAGCATGCGCACCAACAAATTGCAAACACAGCCTTCTATATGAGTAGGCCTTCGCATCACATCTCCACCATCATCTCTCAACCACCCCTCCCTAACACATCAATCATCCTAGACGACAACGCTTACCATGTCTCTACAATAATGCTTCAAAATGAAAATTTCCAGCAACAACAACAACCACATCATAAAATAGGAGGAAGGTCCGCTACTGGTTTGGATGAACTCATTATGGGGTGCACTTCAACTGATATGAAAGAGGTGTCATCCATTCCAAACTCGCAAGAAGCTGAATGGTTAAAGTACTCTTCTTACTGGCCAGACAACCCGGACCATAATGAATAG 1323 0.4437 MNRISNLSSVSSSDFIDAKLGEHQLCGSKQCPSCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEARNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVTVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQLEEEKEGELVVSKIFYQTQPRQCNWADRSATTGEGSGEPNNGRRDSGSGSCSSKEIVTHRDEMSVVVGVPPITNFTPAMDIQQLKSNHYSFIPFTKSFDEVGIGEASTARELQASGSCQEVHEQQEPHHVTHQQQHQHAHQQIANTAFYMSRPSHHISTIISQPPLPNTSIILDDNAYHVSTIMLQNENFQQQQQPHHKIGGRSATGLDELIMGCTSTDMKEVSSIPNSQEAEWLKYSSYWPDNPDHNE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3120g00008 440 MobiDBLite consensus disorder prediction 217 246 - -
Gabi3120g00008 440 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Gabi3120g00008 440 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 13 329 IPR044799 GO:0003700
Gabi3120g00008 440 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Gabi3120g00008 440 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Gabi3120g00008 440 MobiDBLite consensus disorder prediction 217 245 - -
Gabi3120g00008 440 FunFam NAC domain-containing protein 73 56 212 - -
Gabi3120g00008 440 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3120g00008 Gabi-Chr3120 114649 118826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3120g00008 11 432 NAC Transcription Factor Family AT5G56620 52.423 1.84e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3120g00008 NAM 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3120g00008 - - gmx:100795246 714.916