Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3114g00002 ATGGTTCTTCGTTGGTGCTACTTTGCATGTCTCTTTCTCTTGGTGGCTTTGAAACTAGAGCTAGCTAATGCTCAATTTTACCTAAATGACGAAGATGAACCCGTCACCTTCAAGACAATAGTTGTGGATCCATCTGGGAATGGAAACTTCATTACCATACAATCTGCTATTGATTCAGTTCCTTCCAATAACAGACGTTGGATTTTGATCAAGGTGGCGGCAGGTATCTACAGGGAAAAAGTGAAAATTCCGTTGGACAAGACTTTCATCGCACTAGTAGGAGAGAAAAATAAGGACACTATTGTTGATGGGAATGACCATGCTTCAACCGCTGAAAGTCCAACGATCGAATTCCTTGCTGACAATATTTTTGTCAAATACATGAGTTTTAGGAATTCATACAACAATCCATTAAAAATTAATGACGTGGCAAGTGACATGGCACCTGCGGTATCTGCGAAGGTATGCGGTGACAAAATTTACTTTTATAGAGTTGGCTTTTTTGGTTTCCAAGACACTTTGTGGGACGAATCAGGAAGACATTACTACAAGTTTTGTACCATAGAAGGTGCTGTTGATTTTATCTTTGGTGCAGGCCAGGCTCTGTTTGAGAGGTGTACCATATCTGTTATTGATGCGTTACTGGGTCCAGATAGGCCTGGTTTCATCACAGCACATGGGAGAAATAATCCAAACGATGCAACTGGTTTTGTTTTCAAAGATTGCAAGGTTTTTGGAAATGGGAAAACTTACTTAGGAAGGCCTTGGAGAGATTACGCTAGAGTTCTTTTCTATAAGACCTATATGTCCAACATTGTAAAACCTACTGGTTGGGAAGCATGGCATTCCGTTGGACAAGAGGATCGCGTAACATTTGCTGAGTATAAGAATTTTGGGCCTGGTGCTGACACGTCCAATAGAGTGAGTTGGACTAAGAAGTTGGATTTATCAACGATTAATAAGATGGCAAGTTTGGATTTCATTGACGATGAAGGATGGCTTTCGACCTTTGGAGAACATTATTTTCACTGTTTCCTAGAGTTTCTAAGCTCAATTGAGCTTTCGATTCGAGTTCGTTTGAATTTTCTGCTCACAAATGACTCATTTTTGGATTTTAGTTGGACATCATGTTCACTTGTTAAGAGAGCAAGTGCTCATAAGAAGAAGAAGAATAATAATAAGCAGGAGCAACAGAGGGGATCATCCTCTGCGGTCAGTCGCATGGAAGAAAGTGTTGCGGACTTCAACAATGTTCGCCCACTTTGCATAAATAACCACTGGGGTGCTAAATTGGATGACTTGGAGAAACGTCTTCGTGAGCTTTCACATACCATTTGA 1338 0.4058 MVLRWCYFACLFLLVALKLELANAQFYLNDEDEPVTFKTIVVDPSGNGNFITIQSAIDSVPSNNRRWILIKVAAGIYREKVKIPLDKTFIALVGEKNKDTIVDGNDHASTAESPTIEFLADNIFVKYMSFRNSYNNPLKINDVASDMAPAVSAKVCGDKIYFYRVGFFGFQDTLWDESGRHYYKFCTIEGAVDFIFGAGQALFERCTISVIDALLGPDRPGFITAHGRNNPNDATGFVFKDCKVFGNGKTYLGRPWRDYARVLFYKTYMSNIVKPTGWEAWHSVGQEDRVTFAEYKNFGPGADTSNRVSWTKKLDLSTINKMASLDFIDDEGWLSTFGEHYFHCFLEFLSSIELSIRVRLNFLLTNDSFLDFSWTSCSLVKRASAHKKKKNNNKQEQQRGSSSAVSRMEESVADFNNVRPLCINNHWGAKLDDLEKRLRELSHTI 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3114g00002 445 MobiDBLite consensus disorder prediction 385 405 - -
Gabi3114g00002 445 ProSitePatterns Pectinesterase signature 2. 188 197 IPR033131 -
Gabi3114g00002 445 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 335 - -
Gabi3114g00002 445 FunFam Pectinesterase 35 337 - -
Gabi3114g00002 445 Gene3D - 35 343 IPR012334 -
Gabi3114g00002 445 SUPERFAMILY Pectin lyase-like 38 341 IPR011050 -
Gabi3114g00002 445 Pfam Pectinesterase 40 329 IPR000070 GO:0030599|GO:0042545
Gabi3114g00002 445 Coils Coil 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3114g00002 Gabi-Chr3114 32938 37544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3114g00002 5 287 Carbohydrate Esterase AT2G19150 42.958 1.21e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3114g00002 - - gmx:100819252 429.869