Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3114g00001 ATGAATCTTCGTTGGTGTTTCTTAACTTATCTCTTTCTCTTGGTGGGGTTGAAAGTAGATCTAGCTAATGCTCAGATTTACAGAAAAGTTGGAAAAAAAATCCTCCCTTATTCCAAAATAGTTGTGGATCAAACAGGGCATGGAAACTTCTCTACCATACAATCTGCTATTGATTCAATCCCTTCCAACAACAGACATTGGGTCAACATCAAAGTGAATGAAGGTACCTACAGAGAAAAAGTGAAGATTCCTCTGGATAAGCCTTACATTATACTAACAGGAGATGGAAAGAGGAGAACTTTAGTTGACTGGGATGACCATACGGCAACCGATCAGAGTCCTACATTCTCAATCATGGCTGACAATATTGTTGTCAAATCCATGAGCTTTAGGAATTCATACAACAATCCAATGAATAGTAATCCTGTAACACCTGCCGTAGCTGCGATGGTAATGGGCGACAAGTGTTACTTTTTTAGAGTTGGTTTCTTTGGTATGCAAGACACTTTGTGGGACCAATTGGGAAGACATTACTACAAGCTTTGTACTATACAAGGTGCTGTTGATTTTATCTTTGGTGCAGGCCATGCTTTATTTGAGAGTTGTGTCATATCTGTTATTGATGGGGCACTAGGTCCAGGTTTGCCTGGTTATATCACAGCACAAGGGAGATCAAGTCCAAAAGATTCAAATGGTTTTGTTTTCAAAGATTGTAAGGTGTTTGGAAGTGGGTCAATTTACTTGGGAAGGCCATGGAGAGATTACTCTAGAGTTCTCTTCTACAATACCTATATGTCCTCCATTGTACAACCTATTGGTTGGGATGCATGGTTTTCCGCTGGACACGAGGATCGCATAACGTTTGCTGAGTATGGCAATTTTGGACCTGGTGCTAATACATCCAAGCGAGCGAATTGGGCTAAGAAGTTGGGTTTATCAACAGTTAAGGAGTTGGCAAGTTTGAAATTCATTGACACTGAAGGATGGATAAAAACAGAACCAGTGACACCTCATTTGCTCCTACTGCACGTAATCAGGATCAAATCACAGGATACAATATATCCAATGCCAGTTATGGAGGTCGTTTCTATAGTCCTAGAAGAGGAAGAGGACGTTATGGAGGTCGTTTTAACCGAGGAAGAGGACGTGGAGAGCGTACCAATGTTCAATGCCAATTATGTTATAAGTTTGGTCATGATGTACATTCATGTTGGCACCGGTTTGATGAGAACTTCACACCTATTGCTCCTTCAAACAACACTGCTCAGTATTTTTCACCACAGTACTCTCAATATCCGAACAGTCAATCTCAACAGAATCGTGTATTTCATTACACTCGCGGCCAGAATAATCAACCTCATGCCATGA 1368 0.4079 MNLRWCFLTYLFLLVGLKVDLANAQIYRKVGKKILPYSKIVVDQTGHGNFSTIQSAIDSIPSNNRHWVNIKVNEGTYREKVKIPLDKPYIILTGDGKRRTLVDWDDHTATDQSPTFSIMADNIVVKSMSFRNSYNNPMNSNPVTPAVAAMVMGDKCYFFRVGFFGMQDTLWDQLGRHYYKLCTIQGAVDFIFGAGHALFESCVISVIDGALGPGLPGYITAQGRSSPKDSNGFVFKDCKVFGSGSIYLGRPWRDYSRVLFYNTYMSSIVQPIGWDAWFSAGHEDRITFAEYGNFGPGANTSKRANWAKKLGLSTVKELASLKFIDTEGWIKTEPVTPHLLLLHVIRIKSQDTIYPMPVMEVVSIVLEEEEDVMEVVLTEEEDVESVPMFNANYVISLVMMYIHVGTGLMRTSHLLLLQTTLLSIFHHSTLNIRTVNLNRIVYFITLAARIINLMP 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3114g00001 455 Gene3D - 37 339 IPR012334 -
Gabi3114g00001 455 Pfam Pectinesterase 40 323 IPR000070 GO:0030599|GO:0042545
Gabi3114g00001 455 SUPERFAMILY Pectin lyase-like 39 334 IPR011050 -
Gabi3114g00001 455 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 331 - -
Gabi3114g00001 455 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Gabi3114g00001 455 FunFam Pectinesterase 36 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3114g00001 Gabi-Chr3114 13447 21155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3114g00001 40 283 Carbohydrate Esterase AT2G19150 48.163 2.71e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3114g00001 - - gmx:100819252 505.368