Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3113g00001 ATGGCTCTTAGTTCGGCTCCTGCAGTGTCTATTGAACCAGTTGTTTGCCCTCAAGCAGTGATTGAGTGGTACAAATTAACAGGATCAACAGATTACAAGCGAGGTTGTAGGAAAAGAGATCTGTCCTTAAAAGCAAAGCAACATCTATGTGCTTTGGGTTGGAATTTGTGGTACATTGCTAAGCAAGGTCGATGGGAATTGCGTTATACATCACCCAATGGCAGGAACCATATTTCTCTCAGAAGTGCATGCGAAAGATGCATAGAAGAGGGAGGTTGTGGGCCTGAAAATGTTCCCTTGATTCAGAAAACAAAGGGTCTTCAAGTTAAGCGTGATCATGATCATGATCCTTCAACTACAGCCATTTCATCTTCTGCACAGCCACAAGTGCAACCAAGAAAATGCAAGAAACGAAGAGCAAGAGCGCAGTCATTTGATGATGATGAGCTTGATCAGGCCTCTTCCACTGCTGTCATTCCATCTTCTGCACAATCACATGAGGTATCAAGAAAATGCAAGAAACCGAGGGCTGAGCCAAGAAAGTGCAAGAAAAGGCAAAGGGAGTCATTTGATGATGGTGATGATGATGAGTGGAATCCGATGGGTCAATCTCAATCCACGAGTGAGCTTGATCAGGCCTCTTCCACTGCTGTCATTTCATCTTCTGCACAATCCCAGGAGGTACCAAGAAAATGCAAGAAACCGAGGGCTGATCCAAGAAAATGCAAGAAACTGAGGTCTGAGCCAAGAAAATGCAAGAAACCGAGGGTGAGGCATGGGGATGAGGCACAAAGTTCTTCAAATCCTGGTACAGTTAACTCTTTGTTGATAGACACCAACGTGGTACTTTCAGAATCCAAGGTTTTGGGCCCCACTAACTTTGAGGCTCATGCTGGTTGTACAAAGCAACTTCCATCAACTAGTATCTTCTTGGAAGATGGAAGGTCACTGTTGGATTGCCAAAGGGAAGCATTGAGTACTTCACAACAAAAAAATCACGATGTTGTTATGCAGAGAGACAGTGTTTATAAAGACAATAATGACAGCGTCTGTTCCATATGTCGTTATGGTGGTGAATTGATACTCTGTGATAGATGTCCATCCTCATTCCATCTCACTTGTCTTGGTCTTGAACAAGTTCCTGATGGTGATTGGTTTTGCCCACCATGTTGCTGCAAAATATGCAACCGAGCAAAATACAGAGAAGATTGTGCAGATAATGTGGATTGCAGTATTCTCGTTTGTGATCAATGTGAGCACAAATACCACATTGGCTGCCTAAAGACTAGAGGCATTAGCAGTAACTTGGAAAACAGCCCTAATAAGAATTGGTTCTGCAATTCTGATTGTGAGAACATATTTTGCAGTCTACAGAAGCTGATAGGAAAAGCAATTCCCGTGGGGGGTGCAGATAATCTTACTTGGATGATGTTGAAGACCTTGAAAAGTGATAACCTTGGAGATCTTACTTCTGAAGACCTTGAGCGCTTGAGTCAAATTGAAAGCAAGCTAAGTGTGGCTCTTGGAGTATTCCGTGAGTGTTTTGATCCCGTTATTGATCCTCTCACTGGGAGAGATATCATATCAGATATTATGTCTAGCAGAGGTTCAGAACTTGATGGTTCCAACTTTCGTGGGTTCTACACGGTGATTTTGGAGAGGAATGACCAAGTGATTTCTGCTGCCACCATAAGGATTTATGGTCAGAAGGTTGCTGAGCTACCATTTGTTGCCACTGGGAGGATGTTTCGAAGACTTGGAATGTGTAGTATCTTGATGAATATAATGACCCTAACTG 1798 0.4299 MALSSAPAVSIEPVVCPQAVIEWYKLTGSTDYKRGCRKRDLSLKAKQHLCALGWNLWYIAKQGRWELRYTSPNGRNHISLRSACERCIEEGGCGPENVPLIQKTKGLQVKRDHDHDPSTTAISSSAQPQVQPRKCKKRRARAQSFDDDELDQASSTAVIPSSAQSHEVSRKCKKPRAEPRKCKKRQRESFDDGDDDEWNPMGQSQSTSELDQASSTAVISSSAQSQEVPRKCKKPRADPRKCKKLRSEPRKCKKPRVRHGDEAQSSSNPGTVNSLLIDTNVVLSESKVLGPTNFEAHAGCTKQLPSTSIFLEDGRSLLDCQREALSTSQQKNHDVVMQRDSVYKDNNDSVCSICRYGGELILCDRCPSSFHLTCLGLEQVPDGDWFCPPCCCKICNRAKYREDCADNVDCSILVCDQCEHKYHIGCLKTRGISSNLENSPNKNWFCNSDCENIFCSLQKLIGKAIPVGGADNLTWMMLKTLKSDNLGDLTSEDLERLSQIESKLSVALGVFRECFDPVIDPLTGRDIISDIMSSRGSELDGSNFRGFYTVILERNDQVISAATIRIYGQKVAELPFVATGRMFRRLGMCSILMNIMTLT 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3113g00001 599 Pfam PHD-finger 350 392 IPR019787 -
Gabi3113g00001 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 453 IPR013083 -
Gabi3113g00001 599 MobiDBLite consensus disorder prediction 199 228 - -
Gabi3113g00001 599 SUPERFAMILY FYVE/PHD zinc finger 335 393 IPR011011 -
Gabi3113g00001 599 MobiDBLite consensus disorder prediction 235 253 - -
Gabi3113g00001 599 MobiDBLite consensus disorder prediction 149 166 - -
Gabi3113g00001 599 Pfam Tify domain binding domain 287 324 IPR032308 -
Gabi3113g00001 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 391 IPR013083 -
Gabi3113g00001 599 MobiDBLite consensus disorder prediction 105 272 - -
Gabi3113g00001 599 PANTHER PHD FINGER PROTEIN 12 15 594 IPR042163 GO:0003714|GO:0045892
Gabi3113g00001 599 SMART PHD_3 350 391 IPR001965 -
Gabi3113g00001 599 SMART PHD_3 392 450 IPR001965 -
Gabi3113g00001 599 ProSiteProfiles Zinc finger PHD-type profile. 348 393 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3113g00001 Gabi-Chr3113 5256 7053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3113g00001 287 594 PHD Transcription Factor Family AT5G58610 44.156 3.10e-79 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3113g00001 PHD 2.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3113g00001 - - qsa:O6P43_015988 465.692