Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3112g00003 ATGACTTCAATGACACCACTAGTTCCTTCCCCTTCTTCAGTTTTCATCAATCTATTGTCAAGTCAAGGTTGTTTTGTGGTCTTTGAGGAGGAAGTTGGAAACATATGTGCTTCAACGATTGTAGCAATTGTAGCAAATGTTGTCCCAAATGTTATTTTGGTGGCGCTTTTGGTTCTAGGCTGTTGCTGTTGCTGGAGAAGAAGGCGAAACAAAAACCATGATGCAGATCTAGAAATGGGAGATAGTACTAGGAATTATTTTACTTGTCAAGAAGAGTCTTTGCATTTTGACTTGGCTACAATTGAAGCTGCAACAAATAGGTTCTCGAATGAGAAGAAGATAGACCAAGGTGGATTTGGTGTGGTTTATAAGGGTACCCTTCCTAATGGACAAGAGATAGCTGCAAAGAGGCTATCCATAAGCTCCTTGCAGGGTGACATAGTATTCAGGAACGAGGCTGCACTTGTTGCACTTCAACATATAAATTTAGTTAGGCTTTTAGGATTTTGCTTGGAGGGAGCAGAGAGGATACTTGTTTACGAATTCATCCCCAATTCAAGCCTTGACCGCTTTCTATGTGATCATGAGAACCAAGCAGAGCTTGATTGGGCAACACGTTACCAAATTATAGTTGGGATTGCTGGAGGAGTTAAATACCTCCATGAAGATTCTACTCTTAGAATAATACATCGCGATCTCAAGGCTAGTAATGTCCTATTAGATGACGAAATGAATCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTCCATGGAGACCAAAGTCAAGTTGACTCTACAATGGCCTTTATAACTTACTAA 822 0.4002 MTSMTPLVPSPSSVFINLLSSQGCFVVFEEEVGNICASTIVAIVANVVPNVILVALLVLGCCCCWRRRRNKNHDADLEMGDSTRNYFTCQEESLHFDLATIEAATNRFSNEKKIDQGGFGVVYKGTLPNGQEIAAKRLSISSLQGDIVFRNEAALVALQHINLVRLLGFCLEGAERILVYEFIPNSSLDRFLCDHENQAELDWATRYQIIVGIAGGVKYLHEDSTLRIIHRDLKASNVLLDDEMNPKISDFGMAKIFHGDQSQVDSTMAFITY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3112g00003 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Gabi3112g00003 273 SUPERFAMILY Protein kinase-like (PK-like) 88 264 IPR011009 -
Gabi3112g00003 273 Gene3D Phosphorylase Kinase; domain 1 70 182 - -
Gabi3112g00003 273 Pfam Protein tyrosine and serine/threonine kinase 110 266 IPR001245 GO:0004672|GO:0006468
Gabi3112g00003 273 ProSiteProfiles Protein kinase domain profile. 108 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3112g00003 273 SMART serkin_6 108 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3112g00003 273 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 66 182 - -
Gabi3112g00003 273 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 42 267 - -
Gabi3112g00003 273 Gene3D Transferase(Phosphotransferase) domain 1 183 272 - -
Gabi3112g00003 273 FunFam Os07g0541700 protein 183 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3112g00003 Gabi-Chr3112 39166 40440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3112g00003 35 273 Receptor kinase-like Gene Family AT4G23190 54.772 1.71e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3112g00003 PK_Tyr_Ser-Thr 7.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3112g00003 - - ccaj:109806163 310.071