Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3111g00040 ATGAGCCGCTACGACAGCCGCTCCGGCGATCCAGGTTCCTACCGTGACCGAAGAAGTGATTCGGGGCTAGGTGCACCTACGGCTACAGGATACGGTGGTTCAAGCAGAAAGGAGTACGATGAAGGTGGGTCAGGGTCGCCAAGGAAACTGAATTTGGATGGGTTGCCTCATTTTGAGAAAAACTTCTACAATGAATCACCCGCTGTAAGGGAAATGACGGAGGAAGATGTTAATGAGTATCGCCAGCGGAGGGAAATCACTGTTGAAGGCCGAGATGTTCCAAAACCTGTCAAGTCCTTTCACGATGTTGGTTTTCCAGAATATGTATTGCAAGAAATTAAGAAAGCTGGCTTTGTGGAACCTACACCCATTCAGTCTCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACGCTTGCTTACTTGTTACCCGCCATAGTGCATGTTAATGCCCAGCCAATTCTAGATCCTGGGGATGGACCTATTGTGTTAGTTTTGGCCCCAACACGGGAACTTGCTGTCCAAATACAACAAGAGTGTACTAAATTTGGTGCATCGTCAAGGATTAAGAGTACATGCATATATGGTGGGGTTCCCAAGGGGCCTCAGGTGCGCGATCTCCAGAAAGGTGTTGAAATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGATGGAGTCAAATCATACTAACTTGCGGAGAGTCACATACCTGGTATTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGGAAAATTGTCTCTCAGATTCGTCCTGACCGTCAAACATTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATTATAGGATCTCCTGATTTAAAAGCTAACCATGCTATACGGCAATATGTGGACATAGTTAGTGAAAAGCAGAAATATGATAAATTGGTGAAGTTACTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCACATTACTAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCAGCTCGCGGTTTAGATGTAAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAGGATTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGTGCTAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTGGAGGAAGCTGGACAGAGAGTGAGTCCTGAATTGGCAGCAATGGGGCGCGGTGCACCTCCTCCGCCTTCAGGAGGCTTCCGAGACCGTGGGAAGGGTTATGGCAGTGCTCGCGCATGGAGCTGA 1509 0.4632 MSRYDSRSGDPGSYRDRRSDSGLGAPTATGYGGSSRKEYDEGGSGSPRKLNLDGLPHFEKNFYNESPAVREMTEEDVNEYRQRREITVEGRDVPKPVKSFHDVGFPEYVLQEIKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQECTKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDHITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGGFRDRGKGYGSARAWS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3111g00040 502 CDD DEADc_DDX5_DDX17 109 304 - -
Gabi3111g00040 502 Pfam Helicase conserved C-terminal domain 329 438 IPR001650 -
Gabi3111g00040 502 MobiDBLite consensus disorder prediction 474 502 - -
Gabi3111g00040 502 MobiDBLite consensus disorder prediction 1 17 - -
Gabi3111g00040 502 MobiDBLite consensus disorder prediction 1 54 - -
Gabi3111g00040 502 Pfam DEAD/DEAH box helicase 122 293 IPR011545 GO:0003676|GO:0005524
Gabi3111g00040 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 454 IPR027417 -
Gabi3111g00040 502 FunFam probable ATP-dependent RNA helicase DDX17 60 307 - -
Gabi3111g00040 502 SMART helicmild6 357 438 IPR001650 -
Gabi3111g00040 502 FunFam ATP-dependent RNA helicase RhlB 308 480 - -
Gabi3111g00040 502 SMART ultradead3 117 320 IPR014001 -
Gabi3111g00040 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 98 126 IPR014014 GO:0003724
Gabi3111g00040 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 250 258 IPR000629 -
Gabi3111g00040 502 Gene3D - 61 307 IPR027417 -
Gabi3111g00040 502 CDD SF2_C_DEAD 317 447 - -
Gabi3111g00040 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 477 IPR001650 -
Gabi3111g00040 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 304 IPR014001 -
Gabi3111g00040 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 77 476 - -
Gabi3111g00040 502 Gene3D - 308 478 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3111g00040 Gabi-Chr3111 386485 392859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3111g00040 85 458 Eukaryotic Initiation Factors Gene Family AT3G19760 34.667 1.37e-78 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3111g00040 K12823 - gmx:100781619 916.376