Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3111g00023 ATGAACGGCAGCATATCACAAGCTTGCTCTGCTTGTAAATACCAACGCAGGAAGTGTGGACCCGACTGCATTCTCGCACCATATTTTCCTCACGATCACCAAAGGCAATTTTTGAACGCACATAAATTATTTGGTGTTGGCAAAATTAAGAACATCATCGAGCCACTCGACACTAAGGACAGAGACATAGCCATGAATACCATCATTTTCCAATCTGACATCCGCGCCACTGACCCTGTCGGAGGTTGTTACAGGCACATACAACACCTTCAGTCTCAAATTGAATACTATAAGGCTGAGCTTCAGCTTGTCCTTCAACACCTTGATTTTTGCAGAGCACAGGCTCATCCTCAACCGGCACAGATTCAAGATGTTGTTTATCATTCAACTGCTAATGCAGATCAATCAGTTAATTTGAATGCTGCTACTTCTGGTCACCATTACTACTTTCCACAAGTGCCATTACATTCACAAGTGCAGTTACCATTGTCGCCCTTGTCATTAGAGGACAAGAACAAAGATTGCTTTGACTATGGCTATGATCAAAAGCCTATTCTTGACTTGATCAGAGAAATGAATTCAGACGACAGTAGAAAACTTTAA 603 0.4196 MNGSISQACSACKYQRRKCGPDCILAPYFPHDHQRQFLNAHKLFGVGKIKNIIEPLDTKDRDIAMNTIIFQSDIRATDPVGGCYRHIQHLQSQIEYYKAELQLVLQHLDFCRAQAHPQPAQIQDVVYHSTANADQSVNLNAATSGHHYYFPQVPLHSQVQLPLSPLSLEDKNKDCFDYGYDQKPILDLIREMNSDDSRKL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3111g00023 200 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Gabi3111g00023 200 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Gabi3111g00023 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3111g00023 Gabi-Chr3111 245818 246420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3111g00023 7 116 AS2 family AT3G13850 65.455 5.12e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi3111g00023 LOB 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3111g00023 - - ccaj:114916407 199.904