Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3111g00018 ATGATGAAGGGTTTGATGTTCCAACAAGAACAGCAGCAGCAGCAACCATTGGTGGAGGAAAACATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCTTCCTCAGGCAACAGAACAGAAATTGGTACCAGTTACCCTCAACAACACCTTGCTTCACCACCAACTCAAACACAGCCTCCACTTAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCAGATGCTGAAGTAATCGCCTTGTCTCCAAAGACTCTTATGACATCGAATAGGTTCATTTGTGAGATCTGTAACAAAGGATTCCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGACACAATTTACCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGATAAAGAAGAAGGTGTATGTGTGTCCAGAAGCCACTTGTGTGCACCATGACCCAGCAAGAGCCCTGGGAGACCTAACAGGTATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGAAGTATGCAGTTCAATCAGACTGGAAAGCTCACTCGAAAACCTGTGGAACAAGGGAGTATAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCAGTGACAGGCATAGCCAACGCACTTCAACCTGCAGGAGCCTCTTCAGCCTCTCATCATCAGATGAATATTCTCCAAACTCAAAACATTCATGGTTTCCCATTGAAGAAAGAGCAACAAAGTTTCAATCTAAGGGCAGAAATACCACCTTGGCTTGCCCCACCACCACCCACCGTTGATCCAATCTTCTCCCCAAGGTTGGATCAAGATCTTAGCCTCATTGAAAACCCAAACCCTAACCCTAGACTTGGTCCCACTCTTCCTGCATTTCAACAAACACCTTCACCTCACATGTCAGCTACAGCGTTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGTACCAAAACTTGCTCTTCACCACCACCCATGATCAGGACCCACCAACAAGCTCACGTGCATGCTGACTATGGCAATGGCAACTTCTCAAGCAGTAATTTTGGTTTAAATTTGGCACCTTTTGGGAATAAAGCTGCAGATGCAGATGGTGCTCCCTCAGACCCTATCCTTCATCATGTTATCAACTCTTTCTCTTCTTCTTCTTCTGGGTTTGAAGGAACTTCTTTTGAGGACACTTTTCGTGGGATTCTCAACACAAACAAAGATAATACCATTGCAAAAACAACCACCACCAGAGAAAGTGAAGCATTGACGAGAGATTTCTTGGGTCTTAGACCCCTCTCTCATAGTGATATCCTCACCATTGCTGATATGAGAAACTGCATGAACTCATCCCATGATCAACAAAACCAATCCCAAAAGCCCTGGCAAGGTTAG 1455 0.4522 MMKGLMFQQEQQQQQPLVEENMSNLTSASGEASASSGNRTEIGTSYPQQHLASPPTQTQPPLKKKRNLPGNPDPDAEVIALSPKTLMTSNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIKKKVYVCPEATCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVTGIANALQPAGASSASHHQMNILQTQNIHGFPLKKEQQSFNLRAEIPPWLAPPPPTVDPIFSPRLDQDLSLIENPNPNPRLGPTLPAFQQTPSPHMSATALLQKAAQMGATMSTKTCSSPPPMIRTHQQAHVHADYGNGNFSSSNFGLNLAPFGNKAADADGAPSDPILHHVINSFSSSSSGFEGTSFEDTFRGILNTNKDNTIAKTTTTRESEALTRDFLGLRPLSHSDILTIADMRNCMNSSHDQQNQSQKPWQG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3111g00018 484 Gene3D Classic Zinc Finger 72 142 - -
Gabi3111g00018 484 SMART c2h2final6 168 188 IPR013087 -
Gabi3111g00018 484 SMART c2h2final6 133 163 IPR013087 -
Gabi3111g00018 484 SMART c2h2final6 92 114 IPR013087 -
Gabi3111g00018 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 470 IPR031140 -
Gabi3111g00018 484 FunFam protein indeterminate-domain 12-like 71 139 - -
Gabi3111g00018 484 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Gabi3111g00018 484 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Gabi3111g00018 484 Gene3D Classic Zinc Finger 147 226 - -
Gabi3111g00018 484 MobiDBLite consensus disorder prediction 1 64 - -
Gabi3111g00018 484 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Gabi3111g00018 484 MobiDBLite consensus disorder prediction 1 76 - -
Gabi3111g00018 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Gabi3111g00018 484 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3111g00018 Gabi-Chr3111 200854 203778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3111g00018 18 341 IDZ Gene Family AT1G55110 59.483 7.06e-128 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3111g00018 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3111g00018 K25870 - cave:132187040 629.787