Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3111g00013 ATGGATTATTATGTTTCCCAACATTCGCAATTGGAGTCTGACACTTCCGCCTACAATGTTGGGCAAAAAGATGAATGTTATCAAATAGGGCATGGTTTTGATGCCAATGATGACCTAGATAGCAACGTAAAGCCCTCCTTCAATCGTCGCGATTCATCTTCAGGAAAACTCTTCGTTGGAGGCATATCTTGGGAGACTTCTGAAGAGACATTTTTTAAATACTTCAGCAAATACGGAGAAGTAATAGATTCAGTGATAATGATGAATAAACATTCTGGAAGGCCGCGGGGATTTGGATTTGTAACATTTGCTGATTCAGCTGTTGCTGATGAAGTTTTGGCACAGGAGCATACCATAGATGGCAGAGTGGTTGAAGTCAAGAGGACAGTCCCTAGGGAGGACATGGAAGCTACTGGGGTATTAAAAACAAAGAAGATCTTTGTCGGTGGATTACCCCAGTTTTTCACTGATGATGAGTTGAAGGAATACTTTTCACCTTATGGTCATATTGTTGAGTGCCAAATCATGCTAGATCATAAGACTGGGCGATCTAGAGGCTTTGGATTTGTCACCTTTGACAGTGAAGATTCTGTTGATAATGTTTTTTCAGTGGGAAAAATTCATGAACTTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATTACGGCAGCACCTCCCGAAAGTCATATGGTGGTTTTGACAATGGAATGGATGGATTTGGTGGGCATAATTCTAGAGGTCATAATCATGGAAAAAAGGGTGTACAGTGTACAGCTTCTGGGATGAATGGGGCATATAGCCATTTTGAGGGGAGCTATAGTGGAAGCTCTGCTGCTGCTTATGGTGGCTATTGTGGATATGGTTATGGATTTGGATATGGTGGGCCAATGTATTGCTTTGGCGGTTATGGAGTCAATTCTTACAGTAATCTTGGTGGTTATGCTGGCATTACTGCCTATGGAGATGGTAATGCATATGGAAGAACTGGTGGTTTCAATCGCACTGGTGGCTATGACAGTGGCAAAGTGGCTGAGAAGGATGATGGTCCTATTGCTGGAAGATACCATCCTTACTGGAAGTGA 1104 0.4266 MDYYVSQHSQLESDTSAYNVGQKDECYQIGHGFDANDDLDSNVKPSFNRRDSSSGKLFVGGISWETSEETFFKYFSKYGEVIDSVIMMNKHSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEATGVLKTKKIFVGGLPQFFTDDELKEYFSPYGHIVECQIMLDHKTGRSRGFGFVTFDSEDSVDNVFSVGKIHELGGKQVEIKRAEPKRSGVDYGSTSRKSYGGFDNGMDGFGGHNSRGHNHGKKGVQCTASGMNGAYSHFEGSYSGSSAAAYGGYCGYGYGFGYGGPMYCFGGYGVNSYSNLGGYAGITAYGDGNAYGRTGGFNRTGGYDSGKVAEKDDGPIAGRYHPYWK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3111g00013 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 124 IPR000504 GO:0003723
Gabi3111g00013 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 212 IPR000504 GO:0003723
Gabi3111g00013 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Gabi3111g00013 367 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 32 366 - -
Gabi3111g00013 367 SMART rrm1_1 56 127 IPR000504 GO:0003723
Gabi3111g00013 367 SMART rrm1_1 145 218 IPR000504 GO:0003723
Gabi3111g00013 367 SUPERFAMILY RNA-binding domain, RBD 142 251 IPR035979 GO:0003676
Gabi3111g00013 367 Gene3D - 53 136 IPR012677 -
Gabi3111g00013 367 Gene3D - 137 263 IPR012677 -
Gabi3111g00013 367 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 136 271 - -
Gabi3111g00013 367 FunFam Heterogeneous nuclear ribonucleoprotein 1 54 135 - -
Gabi3111g00013 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 131 IPR000504 GO:0003723
Gabi3111g00013 367 SUPERFAMILY RNA-binding domain, RBD 47 135 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3111g00013 Gabi-Chr3111 133480 136317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3111g00013 49 218 Eukaryotic Initiation Factors Gene Family AT1G49760 30.729 1.08e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3111g00013 K12741 - gmx:100818080 531.946