Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3111g00008 ATGGGGCATCATTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGTTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACTTATGGACATGGTTGCTGGAGCTCTGTCCCAAAACTTGCAGGCCTTCAGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCCCTCATTATCGAACTCCATAGTATTCTAGGCAACAGGTGGGCTCAGATAGCAAAGCACTTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCCTTTCTCATGATGTTGCTCCTTCTTTAGCCACATTTTCTCATGATATTCATGTCCCTGCAGCCAATGTTTCTGTTGAAAGTTTCTTCCCTTTAACTGACAACCCAATCCTAAACTCTCATCATCATCATAACCTAGACCAGCTATTCCTTCCCATCACATCCCCAATCCTACAAGGTTTTGATCATAATGATATCAAGATAGACATTAACAATTATAATTCCAATTTCCTACATATTCAGAATCCAATGCCAGAAACTATACCATCCAATCCATCTTCCTATGAAGATACATGGTCATTGGGCTGCGTACCTATTCTTCTTAATCCAAGTCAAGAAAATCAAATTACCAAAAGTGATACCACCCCACATTATATTGTTGAGAAATTCATCAATATTCCAAGTACATGGCAGCATTATGACTGTCACTTGGTGGAACCCATTGTGCCAAAAGTCTGTGAGAGAATTGAGGATTATGTTTGTAGCATCCCATATTCTTCTTCTTCTTCACAAGAACATGAGGCTCTTGCAAGAATTCAGTGTGATGCACCTGGTATTTTTCCACAAGATCAAACTGTGACAACCAATCAAGTGGAGCACATTGATGCCCTCATGTCATCGTTACCATCCTTAACAACATCTTCATTGTCAGTATCATTCTACCAAGTAGACAATTAG 1023 0.3959 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVAPSLATFSHDIHVPAANVSVESFFPLTDNPILNSHHHHNLDQLFLPITSPILQGFDHNDIKIDINNYNSNFLHIQNPMPETIPSNPSSYEDTWSLGCVPILLNPSQENQITKSDTTPHYIVEKFINIPSTWQHYDCHLVEPIVPKVCERIEDYVCSIPYSSSSSQEHEALARIQCDAPGIFPQDQTVTTNQVEHIDALMSSLPSLTTSSLSVSFYQVDN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3111g00008 340 FunFam MYB transcription factor 6 66 - -
Gabi3111g00008 340 SMART sant 66 114 IPR001005 -
Gabi3111g00008 340 SMART sant 13 63 IPR001005 -
Gabi3111g00008 340 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3111g00008 340 FunFam Myb transcription factor 69 116 - -
Gabi3111g00008 340 CDD SANT 17 61 IPR001005 -
Gabi3111g00008 340 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3111g00008 340 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3111g00008 340 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Gabi3111g00008 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3111g00008 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3111g00008 340 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3111g00008 340 Gene3D - 69 116 - -
Gabi3111g00008 340 CDD SANT 69 109 IPR001005 -
Gabi3111g00008 340 PANTHER MYB DOMAIN PROTEIN 55 1 148 - -
Gabi3111g00008 340 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3111g00008 Gabi-Chr3111 81918 83206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3111g00008 1 198 MYB Transcription Factor Family AT3G13890 62.121 4.63e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3111g00008 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3111g00008 K09422 - gmx:102662609 484.182