Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3111g00005 ATGGCGCGGCGGAGGATCGGGGCAAGGCTCCGCAGGAGCAATCTTCACACATTTGGTTGCCTTCGGCCAACTACCACTGAGGAGGTGCCTCATCCACTTCAAGGTCCAGGCTACTCGCGAACCGTGTATTGCAACCAGCCTCAAGTTCATGAAAAGAAATCTTTATTTTACTGCAAGAATGATATTTCAACGACCAAATATAATGTTATAACCTTTTTGCCTAAGGCATTATTTGAACAATTTCGAAGGGTTGCTAATATATACTTCCTTCTGGCTGCTTGCCTATCGGCCTCTCCAATTTCACCTTTCAGCCCACTGAGCATGATTGCGCCTTTGGCGTTTGTTGTGGGGCTTAGCATGGCAAAGGAAGCATTGGAGGATTCTCGAAGGTTCCTTCAGGATGTCAAAGTTAATCGCCGGAAAGCTATTCTCCATAAAGGCAATGGTGTTTTTGGTCTCAGGTCGTGGCAGAAAATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGTCATCAAGTTATGAGGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGCGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGGCTACCTTGTCTCTAGATAATGATGGAGCTTTTAAGGATTTCTCTGGAACAATACGTTGTGAAGACCCAAATCCCTATCTTTACACTTTCGTTGGGAACTTTGAGAATGAACGTCAGGTTTTCCCTCTTGATCCTAGTCAAATTCTCCTCCGAGATTCAAAGCTTAGGAACACTGATTATGTCTATGGGGTGGTCATTTTCACTGGTCACGACAGCAAAGTCATGCAGAATTCTACGAAATCCCCCTCAAAAAGAAGTACAATAGAAAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATTGATATCCTTCATTAGTTCAATAGGATTTGTTGCAAAGACCAAGTACCAAACCCCAAAGTGGTGGTATCTACGGCCTGACAATATTGAATCTCAGTATGATCCTGGGAAAATTGGGTTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTATATGGATATTTAATACCCATCTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTCTTACAGGCAACCTTCATTAACCAAGATATTCAAATGTATGATGAAGAAACTGGGACTCCAGCTGAAGCACGGACGTCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTTTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTCTTGAAGTGCTCTATCGCGGGTACTGCCTATGGTGCGCGTTCCAGTGAAGTTGAACTTGCTGCAGCAGAGCAGATGGCTTCTGATCTTGAGGAGCAGGATTTGGATCTCTCTAATTTCCCCATGCCTAAGAAGAGTAAAGTGCCATTGAAGAATGTTAGAAAAGCTGAAGAAATTGAATTGGAGACTGTTGTTACTTCCAAGGGGGATGAGGGTCGAAGGCCTTCCATAAAGGGATTTGGATTTGAAGACAACCGCCTCATGAATGGTAACTGGTCGAAAGAGCCCAAAACTGATGTCCTTTTATTGTTTTTCCGGATATTAGCAGTTTGCCATACTGCTATTCCTGAGCTGAATGAGGAGACTGACAGTTGTACATACGAAGCTGAGTCACCTGACGAAGGGGCTTTTCTTGTAGCAGCTAGAGAATTTGGTTTTGAATTTTATAGAAGAACTCAATCAAGTGTTGTTATACGTGAAAGGTTTTCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAAAATCTTGAATTTGCTGGATTTTACTAGTAAAAGAAAACGTATGTCAGTGATTGTGCGTGATGAGGAGGGAAGCATTATTCTTATGTGCAAAGGAGCTGACAGTATCATATTTGATCGATTGTCTAAGGATGGAACAATGTATTTGGAGGCTACTACTAGACATTTGAATGAATATGGAGAAACTGGTTTGAGAACACTAGCCTTGGCTTACAAAAAGCTTGATGAGCAAGAGTACTCTGATTGGAATAATGAGTTTCAGAAAGCCAAGACAGCTGTTGGGCCTGACAGAGAGGCAATGCTGGAGCAGGTATCAGATATTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAACTGCAGAAAGGGGTGCCACAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTGTTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGATTCGCTTGTAGTTTGCTTCGACAAGGGATGAAGCGAATCTGTATCACTACTATGAATTCAGATTCAGTAACTGGTGATGGCAAAGAGGTCATCAAAGGCAACATCTTGAATCAAATCACCAATGCCTCACAAATGATAAAGCTGGAGAAGGATCCACATGCAGCGTTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGATATCAAGCACCAATTTTTGGGATTGGCTGTTGATTGTGCATCTGTCATTTGCTGTCGTGTGTCTCCCAAGCAAAAGGCATTGGTAACAAGGTTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCTATAGGTGATGGCGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTGCTATTGCTCAATTCCGGTTTTTGGAGCGGCTTCTGGTGGTCCACGGACACTGGTGTTACAAGAGAATTGCGCAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGTCAATCGGTTTATGATGACTGGTACATGATACTGTTCAATGTTGTTCTTACATCATTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCATTGTATCAGCAAGGACCCAAAAACTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGAAATGGTCTCTATTCCTCCCTCATCATTTTCTTCCTTGTCATCATCATCTTCTACGACCAAGCATTCCGATTGGATGGCCAGATTGCGGACATGGCTGCTGTTGGTACCACAATGTTCACTTGCATCATCTGGGCTGTCAATTGCCAGATTGCACTGACAATGAGTCATTTTACGTGGATTCAACATCTCTTTGTGTGGGGCAGCATAGCCACTTGGTACTTCTTTCTCTTGGTATATGGCATGCTTTCTCCACAATATTCCAAGACTGCCTACCAAATATTGGTTGAAGTTCTTGCTCCTGCTCCTATTTATTGGACAGCAACCCTTTTAGTAACAGTTACATGCAATCTTCCTTATCTAGCCCACATATCCTTCCAAAGATGTTTTAATCCAATGGATCATCACATTATTCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGGTCTAAAGCAAGACAGGAAACAAAGATTGGATTCACAGCAAGAGTGGAAGCAAAGATCAGACATTTTAAAGGGAAGATGCAGAAGAAGCAATCTTCACTGGGGGTTTTGTCCCCTTCATGA 3672 0.4202 MARRRIGARLRRSNLHTFGCLRPTTTEEVPHPLQGPGYSRTVYCNQPQVHEKKSLFYCKNDISTTKYNVITFLPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNRRKAILHKGNGVFGLRSWQKIMVGDVVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIRCEDPNPYLYTFVGNFENERQVFPLDPSQILLRDSKLRNTDYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQTPKWWYLRPDNIESQYDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGARSSEVELAAAEQMASDLEEQDLDLSNFPMPKKSKVPLKNVRKAEEIELETVVTSKGDEGRRPSIKGFGFEDNRLMNGNWSKEPKTDVLLLFFRILAVCHTAIPELNEETDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFSASGQVVEREYKILNLLDFTSKRKRMSVIVRDEEGSIILMCKGADSIIFDRLSKDGTMYLEATTRHLNEYGETGLRTLALAYKKLDEQEYSDWNNEFQKAKTAVGPDREAMLEQVSDIMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKRICITTMNSDSVTGDGKEVIKGNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDIKHQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIIFFLVIIIFYDQAFRLDGQIADMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSIATWYFFLLVYGMLSPQYSKTAYQILVEVLAPAPIYWTATLLVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRHFKGKMQKKQSSLGVLSPS 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3111g00005 1223 SFLD C1.7: P-type atpase like 404 931 - -
Gabi3111g00005 1223 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1148 IPR023298 -
Gabi3111g00005 1223 FunFam Phospholipid-transporting ATPase 590 721 - -
Gabi3111g00005 1223 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Gabi3111g00005 1223 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Gabi3111g00005 1223 SUPERFAMILY Calcium ATPase, transduction domain A 147 286 IPR008250 -
Gabi3111g00005 1223 CDD P-type_ATPase_APLT_Dnf-like 60 1033 - -
Gabi3111g00005 1223 FunFam Phospholipid-transporting ATPase 118 288 - -
Gabi3111g00005 1223 NCBIfam HAD-IC family P-type ATPase 852 961 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3111g00005 1223 SUPERFAMILY HAD-like 410 924 IPR036412 -
Gabi3111g00005 1223 Gene3D - 112 289 - -
Gabi3111g00005 1223 FunFam Phospholipid-transporting ATPase 723 920 - -
Gabi3111g00005 1223 Gene3D - 719 920 IPR023214 -
Gabi3111g00005 1223 Gene3D - 434 494 IPR023299 GO:0000166
Gabi3111g00005 1223 Gene3D - 590 697 IPR023299 GO:0000166
Gabi3111g00005 1223 Gene3D - 419 433 IPR023214 -
Gabi3111g00005 1223 Pfam Cation transport ATPase (P-type) 545 650 - -
Gabi3111g00005 1223 Pfam Phospholipid-translocating P-type ATPase C-terminal 908 1158 IPR032630 -
Gabi3111g00005 1223 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 522 685 IPR023299 GO:0000166
Gabi3111g00005 1223 SFLD p-type atpase 404 931 IPR044492 -
Gabi3111g00005 1223 NCBIfam phospholipid-translocating P-type ATPase 57 1166 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Gabi3111g00005 1223 Coils Coil 448 468 - -
Gabi3111g00005 1223 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Gabi3111g00005 1223 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 1182 - -
Gabi3111g00005 1223 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3111g00005 Gabi-Chr3111 19858 27079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3111g00005 1 1221 Primary Pumps ATPases AT1G17500 75.286 0.0 1934