Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3111g00004 ATGCGCGAGGAGAGGAGAGGCATCACGACGATCCCTCCTCTCTCTCTCTCTCCCTCTCCTCATTCTCCCTTGCTTTTAGAGAGAGAAAGTATTTTTTCCAATTTTCTCCCCAACCTTTTCTCTGCTACTTCCAACTCCTTCCATTTTCAATTTTCATCGTTAGGGTTTAATTCGCCAATCGTAGGGTTTTGGTCTCATCGAATGGAAGCTCGGGTTGGGAACAAGTTCCGTCTTGGCCGTAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACTAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAGTGTCAAAACTAAGCACCCTCAATTGTTGTATGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCGTTGAAGGAGAATACAATGTCCTTGTGATGGATTTATTGGGCCCTAGTTTAGAGGATTTATTCAATTTCTGTAGTCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAACCGAGTTGAATATGTTCATTCAAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCCAAGAAATACAGGGACACCTCTACCCATCAGCATATTCCTTACCGAGAGAACAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAACACTCATCTTGGAATTGAACAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTAATGTATTTTTTGAGAGGAAGTCTTCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTGTGTCGTGGCTACCCCTCAGAATTTGCTTCATACTTCCATTACTGTCGGTCACTACGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTTCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAACTCCTTTTGCACGTGCCATTGGTCCTGCTGCTGGACCAAGTTCTGGCATACCGCCAGCTGTTGATGCGGATAGACAGACAGGTGGGGAAGACGGTAGGCATACTGGTTGGTCTTCTTCAGATCCTACTCGTAGAAGACACTCTGGACCTATTGCAAATGATGGAATCTTATCGAGACAAAAAGCCCCAGTTCCAAGTGACTCTACTGGATCTAAAGAAGTTAAGTTGTCTAGCTCTAATTTCTTACGGTCAAGTGGATCTACAAGGCGAGGTGCTGTCTCCAGCAACCGTGATGCAGTTGTTGGCAGTGAGGCTGAGCCCTCTCGTCCTCTCACAGTGGATGCGAACCCAGGAGCACTCCGTAAAGTCTCCGGTGCTCAAAGAAGCTCACCTATCACTTCATCCTCTGGCAGAAACACATCAAACGTAAAGAATTTTGAGTCAACTCTCCGAGGTATTGAGAGCCTGAATTTCAACGAGGAGAGGGTACAGTATTAG 1596 0.4361 MREERRGITTIPPLSLSPSPHSPLLLERESIFSNFLPNLFSATSNSFHFQFSSLGFNSPIVGFWSHRMEARVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLESVKTKHPQLLYESKLYKILQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEYVHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQTPFARAIGPAAGPSSGIPPAVDADRQTGGEDGRHTGWSSSDPTRRRHSGPIANDGILSRQKAPVPSDSTGSKEVKLSSSNFLRSSGSTRRGAVSSNRDAVVGSEAEPSRPLTVDANPGALRKVSGAQRSSPITSSSGRNTSNVKNFESTLRGIESLNFNEERVQY 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3111g00004 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Gabi3111g00004 531 SUPERFAMILY Protein kinase-like (PK-like) 72 357 IPR011009 -
Gabi3111g00004 531 CDD STKc_CK1_delta_epsilon 75 349 - -
Gabi3111g00004 531 SMART serkin_6 76 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3111g00004 531 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Gabi3111g00004 531 PANTHER CASEIN KINASE-RELATED 74 442 - -
Gabi3111g00004 531 Pfam Protein kinase domain 77 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3111g00004 531 MobiDBLite consensus disorder prediction 492 509 - -
Gabi3111g00004 531 FunFam Putative Casein kinase I 68 152 - -
Gabi3111g00004 531 MobiDBLite consensus disorder prediction 392 407 - -
Gabi3111g00004 531 ProSiteProfiles Protein kinase domain profile. 76 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3111g00004 531 MobiDBLite consensus disorder prediction 428 460 - -
Gabi3111g00004 531 MobiDBLite consensus disorder prediction 371 476 - -
Gabi3111g00004 531 MobiDBLite consensus disorder prediction 488 509 - -
Gabi3111g00004 531 FunFam Casein kinase I isoform delta-like 68 373 - -
Gabi3111g00004 531 Gene3D Transferase(Phosphotransferase) domain 1 65 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3111g00004 Gabi-Chr3111 11221 16256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3111g00004 56 280 MAP Kinase Kinase Kinase AT3G06030 27.917 3.97e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi3111g00004 Pkinase 2.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3111g00004 K02218 - gmx:100778165 816.609