Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3111g00002 ATGCTACACGTGCTTAACTCTATCACAAGATCATGTGTGATGTTTTATTCTTGTTCTAAAGGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACAGCAACGTTCTGTTCCGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAACAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACTAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCTGGGCGTGTGTTTGACATGCTGCGGAGACAGTCTCTTCGCCCAGATCATATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATCTTCCAACTACTTCCAGCTAAAATTCAGGTTGGAGTTTTCTCTGCTACAATGCCACCAGAAGCCCTGGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTTGTAAAGCGTGATGAATTGACCCTTGAGGGTATCAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTAGAGACATTATGCGACCTTTACGAGACTCTGGCTATCACCCAGAGTGTCATTTTCGTGAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAACGACCACACAGTTTCGGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTCCGCTCTGGCTCTTCTCGAGTTCTAATTACCACTGACCTCTTGGCTCGTGGTATAGATGTGCAGCAAGTGTCTCTGGTTATAAACTATGATCTGCCTACTCAACCTGAAAATTATCTTCATCGCATAGGTCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGACATTGGATGATGCAAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTCAGCGTAGAGGAGTTGCCATCAAATGTTGCTGATCTACTCTGA 1128 0.4504 MLHVLNSITRSCVMFYSCSKGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVSVEELPSNVADLL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3111g00002 375 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 149 157 IPR000629 -
Gabi3111g00002 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 356 IPR027417 -
Gabi3111g00002 375 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 214 375 IPR001650 -
Gabi3111g00002 375 FunFam Eukaryotic initiation factor 4A-II 9 209 - -
Gabi3111g00002 375 Gene3D - 211 375 IPR027417 -
Gabi3111g00002 375 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 33 203 IPR014001 -
Gabi3111g00002 375 SMART helicmild6 255 336 IPR001650 -
Gabi3111g00002 375 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 18 359 - -
Gabi3111g00002 375 Pfam DEAD/DEAH box helicase 27 188 IPR011545 GO:0003676|GO:0005524
Gabi3111g00002 375 CDD SF2_C_DEAD 215 345 - -
Gabi3111g00002 375 Pfam Helicase conserved C-terminal domain 228 336 IPR001650 -
Gabi3111g00002 375 Gene3D - 9 210 IPR027417 -
Gabi3111g00002 375 SMART ultradead3 21 218 IPR014001 -
Gabi3111g00002 375 CDD DEADc_EIF4A 19 204 - -
Gabi3111g00002 375 FunFam Eukaryotic initiation factor 4A-III 210 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3111g00002 Gabi-Chr3111 4090 6265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3111g00002 21 375 Eukaryotic Initiation Factors Gene Family AT1G72730 92.676 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3111g00002 K03257 - gmx:100809395 695.656