Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3110g00017 ATGGAAAACAGTGGTTGCAGTTTATTAGTATTGACACTCATCTTTGGCACAACCTCTTATGTGTTGTTCCTTCCATCTGTTATATCTTCTAATTCTTCATCCATAAATCAGGAGCGACAGGCTTTGGTTCAAAGTGGTTGGTGGAATCATGACCAAAATGTCTCAAACCATTGTAATTGGACTGGTATCATTTGTAATGAAGCTGGAAGCATTATAGAGATTTCAGATTCGCATACTATTCCATTTGAATTGCGGCGGTTTCAGAACTTGAAGTTGATTTCCTTCCTCAATTTAATCCGTCTAGACCTTAATGGGATGCAACTTAGAGGAAGTATTGCCAAAGAGATAGCTGCACTTTCAAAGCTTGCCTATCTTGACCTCTCCTATAATCATCTTCAAGGTAAGCTTCCTAAAGCACTTTCAAATCTCACACAACTTGAGAACCTTTATCTTTCAGACAATTCTCTTAGTGGTTTTATCCCTTCTTCTTTGGGTCAATTGAAGAATTTGGTCAATCTCTGCCTTCGATTCAACCAAATTGAAGGCCTTATACCAGTAGAATTAGGGAATTTGTCCAATTTAGAGGAATTATATATTTCAAATAATTTACTTGTTGGTTCAATCCCTTCTACTTTGGGTCAGTTGAAGAATTTGACTCATCTTGACCTTTGTTCTAATCAAATTGAAGGTCGTATACCACTAGAACTGGGGAATTTGTCTAGTTTAAAGGAATTATATCTTTCACAAAATTCACTCACTGGTTCAATCCCCTCTTCTTTGGGTCACTTGAAGAATTTGGTCCATTTGTTCCTTGGTTCTAACCAAATTGAAGGCACCATACCAATAGAACTAGGGAATTTGTCCAATCTAGAGGGATTATTTCTTTCAAATAATAGGATCTCCAGTGTTATACCTCCAAAACTTTTTCAAATGGCAAACTTGCATTCTTTGTCTGTCTCATCAAATCAATTGCATGGTTCAATACCATCAGAGAATGTGAATGCTATCAGTCTTTCAAATCTAGACCTTTCCCACAATATACTTTCTGGGTCTATCCCATCTCCTATCCTAATCTGTTCCCCCTTTGCTCCCACTTACAAATCAGTGAATTTAAGCTGCAACTTGTTAAATGGAAGCATCACTTCCCAAATTAGTTGTGTTTCTAACCTTAACCTTAGCCACAATTTTCTCAATGGTGAGGTTCCATATGATTTGGGAAGAAATTCTTTGATAGAAGAGTTGGATCTTAGTTATAATGATTTCACAGGTAAACTACACAAGGAACTTGCTGTTATAGGAGATATAAATCTTTCATACAATTCCTTTGACTTCTCAAGAGATCTTGATTCTGAGTCACAATCACCAGATTATTGTCATTTCAAAGAAGACTCATTGATCGGTTACAACACACCAAATTTCACATTCTGTCATTCTGTCCACCAAACCAATCATGGCACTAGTAAAGCTAAACATTTCATTCTAATTTCTCTTCCTATCATTTGTTTCATTATTCTTGTACTTCTTTCAACATTATATTTCACAAGATGTACTTCTAAGATCAAATTTGAAGGAAGATCAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTCGAAGACATCATTGAAGCAACTGAGGACTTTCACATCAAGCACTGCATTGGAACTGGTGCATATGGTAGTGTCTATAGAGCACAACTGCCGAGTGGCAAGATTGTTGCATTGAAGAAACTCCACCAATTGGAATCTCAAAATCCATCTTTTGACAAGAGTTTTCGCAATGAGGTCAAGGTGTTAACCGAAATCCGTCATAGAAACATTGTAAAGCTTTATGGCTTTTGCCTCCACAATCGATGCATGTTTTTGGTCTATCAATACATGGAAAGAGGTAGCTTAGTGCATGTCTTAAGCAACGGTGTGGAAGCTGAGGAACTGAATTGGAGTAAGAGGGTGAATATCATTAGAGAAATGACACATGCTTTGTCCTACATGCATCATGATTGTACCCCGCCAATTGTTCATCGGGATGTATCAAGTAGCAATGTTTTGTTGAACACACAATTGGAGGCTTATGTCTCAGATTTTGGCACAGCTAGACTCCTTGATCCTGATTCTTCAAATCAAACCTTAGTAGTTGGCACATACGGGTATATTGCCCCAGAGCTTGCCTACACATTGACTGTGACAGAAAAATGTGATGTTTACAGTTTTGGAGTGGTAGCATTAGAAACATTAATGGGAAGACATCCAGGAGAGCTAATCTCATCTTTATCAAACTCATCTACTCATAATATGTTGTTGAAGGATATCTTGGACTCACGTCTTCCCCTTCCTTTCTCTCAAAAGGATGAGCAAGATATAGTGCTTGTGGTAACACTAGCATTGGCATGTTTGTGTTCCAAACCAAAGTCCAGACCTTCAATGCAACATGTGGATCAGGAACTCTCTTGTTTCAAACAGCCACTTCCCTTGCGTTTTGGTGAAATCACAATCATTCAGTTGATGACTCCAGATATATCTTCTATCACCTGA 2550 0.3765 MENSGCSLLVLTLIFGTTSYVLFLPSVISSNSSSINQERQALVQSGWWNHDQNVSNHCNWTGIICNEAGSIIEISDSHTIPFELRRFQNLKLISFLNLIRLDLNGMQLRGSIAKEIAALSKLAYLDLSYNHLQGKLPKALSNLTQLENLYLSDNSLSGFIPSSLGQLKNLVNLCLRFNQIEGLIPVELGNLSNLEELYISNNLLVGSIPSTLGQLKNLTHLDLCSNQIEGRIPLELGNLSSLKELYLSQNSLTGSIPSSLGHLKNLVHLFLGSNQIEGTIPIELGNLSNLEGLFLSNNRISSVIPPKLFQMANLHSLSVSSNQLHGSIPSENVNAISLSNLDLSHNILSGSIPSPILICSPFAPTYKSVNLSCNLLNGSITSQISCVSNLNLSHNFLNGEVPYDLGRNSLIEELDLSYNDFTGKLHKELAVIGDINLSYNSFDFSRDLDSESQSPDYCHFKEDSLIGYNTPNFTFCHSVHQTNHGTSKAKHFILISLPIICFIILVLLSTLYFTRCTSKIKFEGRSTKNGDLFSIWNYDGKIAFEDIIEATEDFHIKHCIGTGAYGSVYRAQLPSGKIVALKKLHQLESQNPSFDKSFRNEVKVLTEIRHRNIVKLYGFCLHNRCMFLVYQYMERGSLVHVLSNGVEAEELNWSKRVNIIREMTHALSYMHHDCTPPIVHRDVSSSNVLLNTQLEAYVSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLTVTEKCDVYSFGVVALETLMGRHPGELISSLSNSSTHNMLLKDILDSRLPLPFSQKDEQDIVLVVTLALACLCSKPKSRPSMQHVDQELSCFKQPLPLRFGEITIIQLMTPDISSIT 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3110g00017 849 ProSiteProfiles Leucine-rich repeat profile. 289 311 IPR001611 GO:0005515
Gabi3110g00017 849 PANTHER LEUCINE RICH REPEAT KINASE 2 32 824 - -
Gabi3110g00017 849 Pfam Leucine rich repeat 112 156 IPR001611 GO:0005515
Gabi3110g00017 849 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Gabi3110g00017 849 ProSitePatterns Tyrosine protein kinases specific active-site signature. 678 690 IPR008266 GO:0004672|GO:0006468
Gabi3110g00017 849 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 78 270 - -
Gabi3110g00017 849 ProSitePatterns Protein kinases ATP-binding region signature. 560 582 IPR017441 GO:0005524
Gabi3110g00017 849 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515
Gabi3110g00017 849 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 282 380 - -
Gabi3110g00017 849 SUPERFAMILY Protein kinase-like (PK-like) 536 821 IPR011009 -
Gabi3110g00017 849 SMART LRR_typ_2 263 286 IPR003591 -
Gabi3110g00017 849 SMART LRR_typ_2 287 311 IPR003591 -
Gabi3110g00017 849 SMART LRR_typ_2 143 166 IPR003591 -
Gabi3110g00017 849 SMART LRR_typ_2 167 190 IPR003591 -
Gabi3110g00017 849 SMART LRR_typ_2 119 142 IPR003591 -
Gabi3110g00017 849 SMART LRR_typ_2 239 262 IPR003591 -
Gabi3110g00017 849 SMART LRR_typ_2 191 215 IPR003591 -
Gabi3110g00017 849 SUPERFAMILY RNI-like 100 442 - -
Gabi3110g00017 849 Gene3D Phosphorylase Kinase; domain 1 515 632 - -
Gabi3110g00017 849 ProSiteProfiles Protein kinase domain profile. 554 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3110g00017 849 SMART LRR_sd22_2 215 236 - -
Gabi3110g00017 849 SMART LRR_sd22_2 167 188 - -
Gabi3110g00017 849 SMART LRR_sd22_2 287 308 - -
Gabi3110g00017 849 SMART LRR_sd22_2 239 262 - -
Gabi3110g00017 849 SMART LRR_sd22_2 119 145 - -
Gabi3110g00017 849 SMART LRR_sd22_2 191 210 - -
Gabi3110g00017 849 SMART LRR_sd22_2 311 343 - -
Gabi3110g00017 849 SMART LRR_sd22_2 263 284 - -
Gabi3110g00017 849 Gene3D Transferase(Phosphotransferase) domain 1 633 828 - -
Gabi3110g00017 849 FunFam MDIS1-interacting receptor like kinase 2 633 827 - -
Gabi3110g00017 849 Pfam Protein kinase domain 554 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3110g00017 849 FunFam Leucine-rich repeat receptor protein kinase MSP1 517 632 - -
Gabi3110g00017 849 Gene3D Ribonuclease Inhibitor 27 187 IPR032675 -
Gabi3110g00017 849 Gene3D Ribonuclease Inhibitor 192 456 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3110g00017 Gabi-Chr3110 324116 326777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3110g00017 77 726 Receptor kinase-like Gene Family AT4G08850 36.425 1.61e-129 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3110g00017 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3110g00017 - - gmx:100789677 1066.22