Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3110g00014 ATGGAAGCAAGAGAAGGTATGAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTTGCACCAAGGAGTGAAGCTCCAAACCAGGTTCATGTACCTGAAGCAGCAGCAGCTGCAGCTGTTGGTGTCTCACCAGTGAGTGTGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGCGGTAGACCAAGGAAATATGGGCCTGATGGGTCTGTGACTATGGCATTGTCACCGTTGCCAATCTCATCTTCAGCTCCACCTTCTAATGACTTTTCAACCGGGAAGCGGGGTAAGCCGCGGGGGATGGAATACAAGCAGTCAAAAAAAGTTGGGTTGGATCATCATAATCTAGGTGACTTGACTGCATGCTCTGATGGTACAAACTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATTACAATGAAGGTGATATCCTTTTCTCAACAAGGACCCCGAGCTATATGCATCTTATCTGCTAATGGTGTAATATCAAATGTTACACTTCGACAGCCTGATTCTTCTGGGGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGACAGGTGGGATGAGTGTCTCGTTGGCAAGCCCTGATGGTCGTGTTGTTGGTGGTGGAGTTGCTGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAGCAGCCAGCAAGATCTGAAACCAAAGAAGCCCAAGTCTGATTATGCAGCAGCCAATGTTAATCCAGCCATTGCCATGGGAGTATCTTCTGCACCACCACCCCCAACTAATGCTGAAAAAGAGGATGTAATGGGTGGACATGTACTGCACAATTCAGGAAATACCCTTAACTCAAGCCTTACTCCTCCAAATGCCTTTAGAAGAGATAACTGGGTCAACATGCACTCTATGTCAGATTCAAGAAAGTCAGCAACTGATATTAACATATCTTTGCCTGATAGTTAA 1032 0.4671 MEAREGMSSGVTVIGAEAPSAYHVAPRSEAPNQVHVPEAAAAAAVGVSPVSVGLDGTAVKKKRGRPRKYGPDGSVTMALSPLPISSSAPPSNDFSTGKRGKPRGMEYKQSKKVGLDHHNLGDLTACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQDLKPKKPKSDYAAANVNPAIAMGVSSAPPPPTNAEKEDVMGGHVLHNSGNTLNSSLTPPNAFRRDNWVNMHSMSDSRKSATDINISLPDS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3110g00014 343 MobiDBLite consensus disorder prediction 57 104 - -
Gabi3110g00014 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Gabi3110g00014 343 MobiDBLite consensus disorder prediction 79 94 - -
Gabi3110g00014 343 Gene3D - 134 265 - -
Gabi3110g00014 343 FunFam AT-hook motif nuclear-localized protein 1-like 134 265 - -
Gabi3110g00014 343 CDD DUF296 134 224 IPR005175 -
Gabi3110g00014 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 317 IPR039605 GO:0003680
Gabi3110g00014 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 252 - -
Gabi3110g00014 343 ProSiteProfiles PPC domain profile profile. 129 270 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3110g00014 Gabi-Chr3110 294349 301613 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3110g00014 6 340 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.923 5.57e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3110g00014 - - gmx:100793726 544.658