Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3110g00008 ATGGATCCTGTAACAGCACAAGGACGTCCTCTCCCACCTCCTTTTCTCACTAGAGATCTTCATCTACACCAACGCCACCAATTCCAACCACACCACAACCACCAAAACAGCGAAGATGAACAAAGCGGAAATGGCAACGGTTTAAACCGTGGCCAAAAACGAGATCGAGATGAAAACAACGCCGGGGCCACCACTCCAACCGGAGGCTCCGCCGCAGGTGAAGCCAAAGAATCAGGCTCAGCGGGGGGAACCGGAGAAGGAGGTAGCGAAATGGGTCGAAGACCAAGAGGTAGACCCGCGGGTTCAAAGAACAAACCAAAACCACCAATCATCATAACAAGAGACAGTGCAAACGCTCTCCGATCCCACGTGATGGAAATCGCCAACGGCTGTGACATCATGGAGAGCATCACCACCTTCGCGCGGCGGAGACAGCGCGGCGTTTGCATTCTCAGCGGCAGTGGCACCGTCACAAACGTCACTCTCAGGCAACCAGCTTCACCCGGTGCAGTTGTGACACTTCATGGAAGGTTCGAGATTCTCTCCTTGTCAGGCTCGTTCCTTCCGCCGCCGGCACCGCCAGCGGCATCGGGGCTGGCCATATACCTAGCCGGAGGACAAGGACAGGTTGTTGGTGGAAGCGTTGTGGGACCCCTTTTGGCTTCTGGTCCGGTTGTTATAATGGCTGCTTCTTTTGGTAATGCTGCTTATGAGAGGCTTCCTTTAGAGGAAGAGGAAACTCCGGTACCGGTTACCGGTAGCGGAGGTTTAGGGTCACCGGGAATTGTAAGTCAACAACAACAGCAACAACAACAGCAACAGCCGCAGCTGGTGGCAGATCATAACACTGCTTCTCTATTCCATGGAGTGCCTCAAAATCTTCTCAATTCATGTCAATTACCAAATGAGGGTTATTGGGGTGGAAGTGCTCGTCCTCCTTTTTAA 945 0.5302 MDPVTAQGRPLPPPFLTRDLHLHQRHQFQPHHNHQNSEDEQSGNGNGLNRGQKRDRDENNAGATTPTGGSAAGEAKESGSAGGTGEGGSEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESITTFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEEEETPVPVTGSGGLGSPGIVSQQQQQQQQQQPQLVADHNTASLFHGVPQNLLNSCQLPNEGYWGGSARPPF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3110g00008 314 CDD DUF296 121 188 IPR005175 -
Gabi3110g00008 314 MobiDBLite consensus disorder prediction 1 111 - -
Gabi3110g00008 314 MobiDBLite consensus disorder prediction 19 38 - -
Gabi3110g00008 314 FunFam AT-hook motif nuclear-localized protein 120 247 - -
Gabi3110g00008 314 MobiDBLite consensus disorder prediction 245 283 - -
Gabi3110g00008 314 MobiDBLite consensus disorder prediction 258 283 - -
Gabi3110g00008 314 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 282 IPR014476 GO:0003680
Gabi3110g00008 314 Gene3D - 120 249 - -
Gabi3110g00008 314 Pfam Plants and Prokaryotes Conserved (PCC) domain 121 233 IPR005175 -
Gabi3110g00008 314 ProSiteProfiles PPC domain profile profile. 117 255 IPR005175 -
Gabi3110g00008 314 PIRSF ESCAROLA 16 314 IPR014476 GO:0003680
Gabi3110g00008 314 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3110g00008 Gabi-Chr3110 151060 152004 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3110g00008 1 314 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 60.479 8.35e-88 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3110g00008 - - gmx:100816243 423.705