Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3110g00004 ATGCAGGGTCATGACGAGCCATGTCGTGAACCCCCAGTGGACAAACGTTGCAGAAAGTTACGAAAAGCAAAAGTTATTTCTTTTGGTTCTAACCATATCATCACCAGCAAAGTTTCCAAACATCTTAGTTCCTCCAGGATATTTACTAGTCCACTTGATCTACATCTACTTTTCCCACCTCAAGTCCTCAACATTCTATTTCTACCCACCAAGCATCTTGATCTCCTCATATTTCTTTCATCACCTCAAAATTCTTACGCTTTAAAGCCGCCTTGTTCCTTTCCCACTCTTTCGTGCACTCAAACACTGCAAAACCTTACCTCTTGTCCCTTTACATTACCTCCCTCCCTTCACTCAAACAACCTTGAGACACACACACACACACAACCCTTCCTCCTTCTCTGTTTGTTTACTTTAGGCAAGCGATCCGTTCAGTCAACAATGAAGCTTGGGACCCCAACTTCCCTTTTTGAGGGCGACCCACCATGCAAAGCCAGGAGGAAAACCCAAACGAAGCTCGTTCGGATCATACTCACCGACCTAGACGCAACTGATTCCAGCGACGAAGAGCGACAAAACAAGCCAACGAGGTCACCAAGAGTGAAGAGGGAAATCATCCAGATCAAAATGCACCTACCTTTCTCAGATTCGCCTCCTCCTCCTTCCTCCTCTTCTTCCTCGGACCATGACCCGGCCAAGCGCAAGAAACCCAAGAAACCGGCACCCTCCACCTTCGCCTTGCACCGCCACAAGTTCCGTGGCGTCCGGCAGCGGCCCTGGGGCAGGTGGGCAGCCGAGATCCGTGACCCTATCCGTCGGAAACGGCTCTGGCTCGGTACCTTCAATACGGCGGAGGAGGCCGCCCTCGAGTACGACAAGGCGGCGGTGAAGCTCAAGGGCCCAAACGCCGTTACAAACTTCCCAAGGAATCCGATGGAGGGCGAGGCAGCGACACCGACACCGACGGTCGCCGTCGACAGCAATATCATAGACGTCGGCGCTCCGTACTCCGATGCTGTCGCGTCGCCGACGTCCGTCTTGGCGTACGACGGCGATTTGACGCCGTTCGACGGTTTCCGTTTCGGCGACGACGTGGACGCGTTCGGGTTCAACTTCGACGTGCCGTTAAGTCTGCCGGACGGGGACGAAATGATGACGTGTCATCAGCGGTTTGAGAAGGAGGAGGTGTTCGGCGAGTTTGATCTCGACGAGTTCATGACGTGGTCCTACTAA 1233 0.5304 MQGHDEPCREPPVDKRCRKLRKAKVISFGSNHIITSKVSKHLSSSRIFTSPLDLHLLFPPQVLNILFLPTKHLDLLIFLSSPQNSYALKPPCSFPTLSCTQTLQNLTSCPFTLPPSLHSNNLETHTHTQPFLLLCLFTLGKRSVQSTMKLGTPTSLFEGDPPCKARRKTQTKLVRIILTDLDATDSSDEERQNKPTRSPRVKREIIQIKMHLPFSDSPPPPSSSSSSDHDPAKRKKPKKPAPSTFALHRHKFRGVRQRPWGRWAAEIRDPIRRKRLWLGTFNTAEEAALEYDKAAVKLKGPNAVTNFPRNPMEGEAATPTPTVAVDSNIIDVGAPYSDAVASPTSVLAYDGDLTPFDGFRFGDDVDAFGFNFDVPLSLPDGDEMMTCHQRFEKEEVFGEFDLDEFMTWSY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3110g00004 410 MobiDBLite consensus disorder prediction 184 203 - -
Gabi3110g00004 410 MobiDBLite consensus disorder prediction 211 251 - -
Gabi3110g00004 410 SMART rav1_2 251 314 IPR001471 GO:0003700|GO:0006355
Gabi3110g00004 410 FunFam Ethylene-responsive transcription factor 2 250 309 - -
Gabi3110g00004 410 SUPERFAMILY DNA-binding domain 251 309 IPR016177 GO:0003677
Gabi3110g00004 410 CDD AP2 251 308 IPR001471 GO:0003700|GO:0006355
Gabi3110g00004 410 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 170 317 - -
Gabi3110g00004 410 PRINTS Ethylene responsive element binding protein signature 274 290 IPR001471 GO:0003700|GO:0006355
Gabi3110g00004 410 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Gabi3110g00004 410 Gene3D AP2/ERF domain 250 309 IPR036955 GO:0003700|GO:0006355
Gabi3110g00004 410 ProSiteProfiles AP2/ERF domain profile. 251 308 IPR001471 GO:0003700|GO:0006355
Gabi3110g00004 410 Pfam AP2 domain 251 300 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3110g00004 Gabi-Chr3110 92542 95043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3110g00004 164 349 AP2-EREBP Transcription Factor Family AT4G27950 44.444 9.84e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3110g00004 AP2 8.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3110g00004 K13434 - gmx:100800489 296.589