Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3110g00001 ATGGCTAGAAAGAGAGTGAAGCTCGCATTCAAGGTAAATGACTCTGTGAGGAAGGCAACATACAAGAAAAAGAAGAACGGTATGATGAAGAAGCTCAAAGAGATCTGCACCGTTTATGGGATTGAGGCATGTGCTATAGTGTACAAGCCTCATGCTCGTCAGCCAGATATTTGGCCTTCCCCAGAGGGGGTCAAAAAGGTGCTGTCCAGGTTCGCGCAGGTGCCTGAACTTGACCGGAGAAGAAACATGATGAACCCGGAGAGTTACCTGAGTCAAATGATCCGGAAGGCCAAGAAGCGGCTGGAGAAGATAAGGGAAGAGAATAGGCAGAAGGAGAAGACCCTTCGCATGTACCAATATCTTAAGTCGGGGAAGATCCCTGACAATTTAACCAAGGCTGAGCTAAAAGATCTGGCTAACGTGATTGATCAGCAAATGAAAGAAATCAAGGAGAAGATGGCTGAACTAGGGAAGGCTGAAACGGCTCAGAGCCAATCCACAATGGTAGCATCGGCATCGCTTGATGATGGAACAGCCAGGAACAAAGGGAAGGCACCTGTGGATGGTGGCCATGGATTGGAGGTGATTCTGGATGTCATGAAAAACAAGCAGTGA 615 0.478 MARKRVKLAFKVNDSVRKATYKKKKNGMMKKLKEICTVYGIEACAIVYKPHARQPDIWPSPEGVKKVLSRFAQVPELDRRRNMMNPESYLSQMIRKAKKRLEKIREENRQKEKTLRMYQYLKSGKIPDNLTKAELKDLANVIDQQMKEIKEKMAELGKAETAQSQSTMVASASLDDGTARNKGKAPVDGGHGLEVILDVMKNKQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3110g00001 204 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Gabi3110g00001 204 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Gabi3110g00001 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3110g00001 204 MobiDBLite consensus disorder prediction 160 190 - -
Gabi3110g00001 204 MobiDBLite consensus disorder prediction 160 174 - -
Gabi3110g00001 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 52 IPR002100 GO:0003677|GO:0046983
Gabi3110g00001 204 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Gabi3110g00001 204 PANTHER MADS BOX PROTEIN 3 155 - -
Gabi3110g00001 204 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Gabi3110g00001 204 Coils Coil 94 114 - -
Gabi3110g00001 204 Coils Coil 132 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3110g00001 Gabi-Chr3110 13803 14417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3110g00001 1 173 Type I MADS-box Gene Family AT5G48670 41.040 1.74e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi3110g00001 SRF-TF 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3110g00001 - - pcin:129317170 191.815