Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3103g00034 ATGGATCTTGTAAGCAGAAGACACTTGATCCATGTGACACAATATGGTTCTCAAGCTCTTTCTCCAATGACAAGTCCAGGGAGTTCAATCTTTCATCCTCATCTGCATTCTTCAGGCACTAGTTTCCCCATCATTGCAATTGCTATAATAGGAATAATGGCTACGGCTTTCTTGCTAGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACCGTATTGATCTTCTAAGACGTTTCTCTACATCTAGGAGGCGTGAAGTTCCAACAACAATATACACACCAGGCACAAAACCTCGTGGACTAGAAGAGGCAGTGATCCGGTTAATACCAGTGATTCAATACAAGACAGAAGGGAATAGAGACATTGGAGAAAGAAGCTACTTTGAATGTGCTGTTTGTTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGATTATACCAAATTGCAGCCATGTATTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCAAATTGCCCACTTTGTAGAACAAGTATTTCCTTGACAAGCAGATTCCACATTGATCAGCTACTCACCCAAAGGATTTCTTCCTCTCAAGATCAAAACCCACCTATTGAAAACCTCATTGGTGGTGATGAAGATTTTGTTGTGATTGAATTGGGTAATGGTCATGATAGAGGCCAAATATTGCAAGGAAGACAAGAAAGAGGCAATGGTTTGGAGTTACCAACATGTCCTATTAGTCCTTTACAAAGGAAGTTGGAGCAGAGAAGTATGCAGAAGAAAGCAAGGAAGCTGCATAAAGTGACAAGCATGGGGGATGAGTGTATTGATATTAGAGCCAAAGATGAACAGTTCTCAGTCCAACCTATCAGGAGGTCTTTCTCCATGGACTCATCAGGGGATAAACAGTTCTATTTAGCAGTTCAAGAAGCTTTGCAGCAGCACAAAGGGCAAGTCAATGAGGGAAGCTCCATTGAAGGATGCAGTGGTAGTGGTAGAGCCAAGAGATCCTTCTTTTCTTTTGGACATGGAAGTAGATCCAGAAGTTCTGTGCAACCTGTTTATTTGGACCCTTGA 1077 0.415 MDLVSRRHLIHVTQYGSQALSPMTSPGSSIFHPHLHSSGTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDLLRRFSTSRRREVPTTIYTPGTKPRGLEEAVIRLIPVIQYKTEGNRDIGERSYFECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFHIDQLLTQRISSSQDQNPPIENLIGGDEDFVVIELGNGHDRGQILQGRQERGNGLELPTCPISPLQRKLEQRSMQKKARKLHKVTSMGDECIDIRAKDEQFSVQPIRRSFSMDSSGDKQFYLAVQEALQQHKGQVNEGSSIEGCSGSGRAKRSFFSFGHGSRSRSSVQPVYLDP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3103g00034 358 CDD RING-H2_EL5-like 132 175 - -
Gabi3103g00034 358 MobiDBLite consensus disorder prediction 339 358 - -
Gabi3103g00034 358 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Gabi3103g00034 358 SUPERFAMILY RING/U-box 132 181 - -
Gabi3103g00034 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 180 IPR013083 -
Gabi3103g00034 358 PANTHER RING-H2 FINGER PROTEIN ATL16 28 354 IPR044600 GO:0016567|GO:0016740
Gabi3103g00034 358 Pfam Ring finger domain 132 175 IPR001841 -
Gabi3103g00034 358 FunFam E3 ubiquitin-protein ligase ATL6 94 181 - -
Gabi3103g00034 358 SMART ring_2 133 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3103g00034 Gabi-Chr3103 375408 376484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3103g00034 1 358 C3H Transcription Factor Family AT1G04360 51.928 2.46e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3103g00034 - - gmx:100775286 545.043