Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3103g00002 ATGGCTTCTTCCATTTTAGGTGTTTCTTCCATATACCAATCCCCCTCTCTCGAACTGCATAAAAGGGCAACGCCAACACCCTCCATTTCTTTGCAATCGTCCTTGGACAACAAGTCCCGTTGCTTCAACACCCTCCTCCGTGCAAACACCAACAACAAACCCACACTTTGTTTTGTTCCTTCCGCCATTGCCACTCCCAACTCTTCCATCCTCTCCGAAGAAGCGTTCAAGGTTTTGGATAATGTTTCTGGTGACGACCAGTTTGGCTATGGTTATGAAACAGAGACCCCTGTTAGCGTCAGCGTCGACGAGCTTGACATTTCCAAGCTTGGTTTGCCTTCGCGCCTTGTCGATTCCCTCCAGAAGCGTGGAATCACTAGCCTTTTCCCCATTCAGAGAGCTGTGTTAGTGCCTGCATTAGAAGGTAGAGATATCATTGCTCGAGCAAAGACTGGGACTGGGAAGACATTAGCATTTGGAATCCCAGTTATTAAGGGTATCACTGATGATGAACAGAGTCCTCTGAGGCGGTCTGGTCGTCTTCCTAGAGTATTGGTTCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCACCTTATCTAAACACAGTTTGTGTTTATGGCGGTGTTTCTTATGTAACACAGCAAAGTGCACTTACGCGCGGTGTTGATGTAGTGGTTGGAACACCTGGTAGACTTATTGACCTAATAAAAGGGAACAGCCTTAGACTGAGTGAAGTTCAGTATTTGGTCCTTGATGAAGCCGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAATGATTTTACAAAAGGTCCCATCTCAGCGGCAGACCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGAATAAATTGTCAAGAAAATATTTGAACAATCCATTGACAATTGATTTGGTCGGTAAAGAAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTATATCAGCCACTGCCACTTCAAAGCGGACAATCCTTTCTGATCTTATATCGGTCTATGCAAAGGGTGGGAAGACTATTGTTTTCACTCAGACAAAAAAAGATGCTGACGAAGTATCATTGGCATTAACAAGTAGTATAACTTCTGAAGCACTGCATGGTGATATATCTCAGCCTCAGAGAGAGAGAACATTGAACGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATTCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGGCGTGCAGGAAAAGCGGGTACTGCCATTCTGATGTACACTAGTAGCCAGAGAAGAACAGTTGGATCCATTGCGCGTGATGTAGGCTGCAAATTTGAATTTATTAGTCCGCCAGCTATGGAAGAAATTTTGGACTCATCTGCCGAGCAAGTTGTCGCTACACTTAATAGAGTTCATCCTGAGTCTGTGAAGTATTTCGCGGCAACTGCACAAAAGCTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCACTAGCACAGCTGAGTGGATTCTCTCGACCTCCATCATCTCGATCTCTTATCAACCATGAACAGGGATGGATTACGTTACAACTGACTCGAGATCCAGTTACATCTAGGGGATTTCTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATATGCTTAATTGAAGATGGAAGGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAGTTACTCAATAAGAACATACCCCCTGGCAACACAATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGACGATGAGCCTGCCAGTGATTACTATGGGAAGTTCTCTAACAGAGATCGAACTAACCGAAGAGGTTCTAGGGATCAGAGAGGAGGTTCTAGGGATTTGAGAGGACGGGGATGGGGAGGGGGTCAAGATTCTGATGATGTCTTTGGTGATACATTTGGGAGAGGTCGTAGAAGTTATGGATCTGGCAACAGCAGGTCTCCAATGGGAAGAAGCAGCGGGGATGACTGGCTAACTGGAGGTGGACGATCCAGCAGGCATTCATCATCAAACAGAGGCGGCAATGGAGGGGCCTGTTTTAATTGTGGACAAGCTGGGCATCGGGCATCAGATTGTCCCAAAAAAAGAGACTTTTTCTAG 2256 0.4521 MASSILGVSSIYQSPSLELHKRATPTPSISLQSSLDNKSRCFNTLLRANTNNKPTLCFVPSAIATPNSSILSEEAFKVLDNVSGDDQFGYGYETETPVSVSVDELDISKLGLPSRLVDSLQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPVIKGITDDEQSPLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALTRGVDVVVGTPGRLIDLIKGNSLRLSEVQYLVLDEADQMLAVGFEEDVEMILQKVPSQRQTMLFSATMPGWVNKLSRKYLNNPLTIDLVGKEEEKLAEGIKLYAISATATSKRTILSDLISVYAKGGKTIVFTQTKKDADEVSLALTSSITSEALHGDISQPQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDSETFVHRSGRTGRAGKAGTAILMYTSSQRRTVGSIARDVGCKFEFISPPAMEEILDSSAEQVVATLNRVHPESVKYFAATAQKLVEEQGASALAAALAQLSGFSRPPSSRSLINHEQGWITLQLTRDPVTSRGFLSARSVTGFLSDVYSPAADEVGKICLIEDGRVQGAVFDLPEDIAKELLNKNIPPGNTISKITKLPPLQDDEPASDYYGKFSNRDRTNRRGSRDQRGGSRDLRGRGWGGGQDSDDVFGDTFGRGRRSYGSGNSRSPMGRSSGDDWLTGGGRSSRHSSSNRGGNGGACFNCGQAGHRASDCPKKRDFF 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3103g00002 751 MobiDBLite consensus disorder prediction 641 665 - -
Gabi3103g00002 751 SUPERFAMILY Retrovirus zinc finger-like domains 711 749 IPR036875 GO:0003676|GO:0008270
Gabi3103g00002 751 SMART c2hcfinal6 730 746 IPR001878 GO:0003676|GO:0008270
Gabi3103g00002 751 MobiDBLite consensus disorder prediction 690 729 - -
Gabi3103g00002 751 ProSiteProfiles Zinc finger CCHC-type profile. 731 746 IPR001878 GO:0003676|GO:0008270
Gabi3103g00002 751 Pfam DEAD/DEAH box helicase 129 300 IPR011545 GO:0003676|GO:0005524
Gabi3103g00002 751 Gene3D - 106 316 IPR027417 -
Gabi3103g00002 751 Pfam Zinc knuckle 730 746 IPR001878 GO:0003676|GO:0008270
Gabi3103g00002 751 CDD GUCT_Hera 540 620 - -
Gabi3103g00002 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 312 IPR014001 -
Gabi3103g00002 751 SMART ultradead3 124 329 IPR014001 -
Gabi3103g00002 751 FunFam Nucleolar RNA helicase II 334 524 - -
Gabi3103g00002 751 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 105 643 - -
Gabi3103g00002 751 Pfam GUCT (NUC152) domain 533 633 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gabi3103g00002 751 Pfam Helicase conserved C-terminal domain 339 446 IPR001650 -
Gabi3103g00002 751 SMART helicmild6 366 446 IPR001650 -
Gabi3103g00002 751 CDD DEADc 116 313 - -
Gabi3103g00002 751 MobiDBLite consensus disorder prediction 614 751 - -
Gabi3103g00002 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 461 IPR027417 -
Gabi3103g00002 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 501 IPR001650 -
Gabi3103g00002 751 Gene3D - 328 532 IPR027417 -
Gabi3103g00002 751 FunFam ATP-dependent RNA helicase RhlE 98 315 - -
Gabi3103g00002 751 CDD SF2_C_DEAD 326 455 - -
Gabi3103g00002 751 Gene3D - 721 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3103g00002 Gabi-Chr3103 15727 21846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3103g00002 60 468 Eukaryotic Initiation Factors Gene Family AT1G72730 36.473 2.70e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3103g00002 - - gmx:100815040 1061.6