Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi30g00012 ATGGTGAAAATGACCGTCTTAGATATGGCTTATCATCTATGCAAGCATGCTGCACATCTTGATCTGGATGCGTCCACTTCGTATTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCCAAGTTTTGTGCCAAGTATCTTCACCAACAGGTGCTCAAGAGTGAAGCATACATAGCTGGAGATGTAGGAACCGCCCTTCAGAAAACATTTTTCAGAATGGATGAGATGATGCGCGGTCAAAGGGGATGGAGGGAATTATCAGCCTTGGGTGATAAGATAAACAAGTTTAATGGGAGGATAGAAGGATTGATTTGGTCTCCACGTAGCTGTGATGGTAAAGACCAAGGTGATGATTGGGCCTTTGAGGAGGGGCCTCATTCTGACTATGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAATTATTAGAAACAATCAACTTTTTGTTGCAAATGCTGGTGATTCACGTTGTGTAATATCTAGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAGGCTGGTGGTTTTATTCATGCAGGACGAGTTAATGGGAGTCTAAATCTTGCAAGAGCTATAGGTGACATGGAATTTAAGCAGAATAGATTTCTTCCTGCTGAAAAACAAATTGTGACCGCTAATCCAGATATAAACACTGTTGACCTTTGTGATGAAGATGAATTTATAGTACTAGCTTGTGATGGCATATGGGATTGCCTGTCAAGCCAACAATTGGTAGATTTTGTACGTCAACAACTGCTCTTGGAAACAAAACTTTCTGCGGTTTGTGAAAGAGTATTAGATCGGTGTTTGTCACCATCAATTGCTGTTGGTGAGGGATGTGATAACATGACCATGATCTTGGTGCTGTTCAAGAAACCGGCTCAGTCCAGTGCTCCAGCACAAGAACAATTCTCTTCAAATGAACAAGCTGCATCTGAACCAAGACTTTGA 996 0.4207 MVKMTVLDMAYHLCKHAAHLDLDASTSYFGVYDGHGGKVVAKFCAKYLHQQVLKSEAYIAGDVGTALQKTFFRMDEMMRGQRGWRELSALGDKINKFNGRIEGLIWSPRSCDGKDQGDDWAFEEGPHSDYAGPTSGSTACVAIIRNNQLFVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNRFLPAEKQIVTANPDINTVDLCDEDEFIVLACDGIWDCLSSQQLVDFVRQQLLLETKLSAVCERVLDRCLSPSIAVGEGCDNMTMILVLFKKPAQSSAPAQEQFSSNEQAASEPRL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi30g00012 331 MobiDBLite consensus disorder prediction 311 331 - -
Gabi30g00012 331 Pfam Protein phosphatase 2C 131 287 IPR001932 -
Gabi30g00012 331 Pfam Protein phosphatase 2C 12 80 IPR001932 -
Gabi30g00012 331 Gene3D - 13 306 IPR036457 -
Gabi30g00012 331 PANTHER PROTEIN PHOSPHATASE 2C 15 303 IPR015655 GO:0004722|GO:0006470
Gabi30g00012 331 ProSitePatterns PPM-type phosphatase domain signature. 28 36 IPR000222 GO:0043169
Gabi30g00012 331 ProSiteProfiles PPM-type phosphatase domain profile. 10 305 IPR001932 -
Gabi30g00012 331 SMART PP2C_4 2 303 IPR001932 -
Gabi30g00012 331 CDD PP2Cc 16 305 IPR001932 -
Gabi30g00012 331 SUPERFAMILY PP2C-like 22 307 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi30g00012 Gabi-Chr30 95602 101762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi30g00012 16 317 PP2C-type Phosphatase Gene Family AT2G25070 74.503 8.36e-180 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi30g00012 K17499 - qsa:O6P43_015776 553.903