Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3097g00001 ATGTTAGCCAATAACTTATCTCCATCATCAGTTCCCACTTCTGAGCCTTTTTCTAACGCTGAGAATGCCACTGCCACCAATAAAAGAAAGAGAAGACCTGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCACTCTCGCCACAAACTTTGTTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTATTGAAGAGGGAAACACCGGTGGTGAGGAAGAGAGTGTTTGTGTGCCCTGAACCTACTTGCTTGCACCATGATCCATGTCATGCTTTGGGTGATCTTGTTGGTATTAAGAAGCATTTCAGAAGGAAACACAGTAATCACAAACAATGGGTTTGTGAAAGATGCTCTAAAGGCTATGCTGTTCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGCACCAGAGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCACCAAGATGCTTGCAACATGGGGAACCTCCGGCGAGAAACTCAGCCACTTCAACCACCACCTGCATGCTTATCTAGAACAGCTTCAAGCCCAAGCCCTTCAAGTGAAACCAATTTCAGCACAGGTCCTTGGCCACTAAGACTTGTAATACCAAAGCCAACAGAAACTACATTCATGAACCCTACTCCTATTATTTCTACTCTTGCTGAAACCTCATCCAAGAACAATATAAAACTCCACCCCAACTTGGAACTTCAACTCTCAACCACCAACAACACCAACACCTCAAACCCTATTGATGTAGCATCTGCATCACTATCACCAAAGAGAGATAATAACGAGAACCATTCCACCCAGTTACAACTCTCAATTGGTTCATCAGATATCAGTGAGAAAAACGAATCAAATAGGAATTCATCACCCAAAGAAAGCAGCAACAGCAGTGAGAAGCCAACTTCTGGCATGGCTGCAATAAGGGTTCAAGAACAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAGGCTTTTGCTGAAGAAGCAAGGAAACAAGCAAAGAAGCAGATTGAACTAGCGGAACAAGAGTTCACAAACGCGAAGAGGATAAGACAACAAGCACAAGCTGAACTTGACAAAGCCTACGCTTTGAAAGAGCATGCAATGAAGCAGATAAGTTCCACTTTGCTTCAAATCACTTGCCATGCTTGCAAACAACAATTTCAAGCAAGAACCGCAACAACACTGGATGAAACTACTTTGGTTCTAAGCTACATGTCTTCTGCCATAACAACAACAGAAGGTGGCGTGGTAGAAAACGATAATGGCAAAAACAACTAA 1368 0.4444 MLANNLSPSSVPTSEPFSNAENATATNKRKRRPAGTPDPDAEVVSLSPQTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGNLRRETQPLQPPPACLSRTASSPSPSSETNFSTGPWPLRLVIPKPTETTFMNPTPIISTLAETSSKNNIKLHPNLELQLSTTNNTNTSNPIDVASASLSPKRDNNENHSTQLQLSIGSSDISEKNESNRNSSPKESSNSSEKPTSGMAAIRVQEQAREHLRIAMAEKAFAEEARKQAKKQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQISSTLLQITCHACKQQFQARTATTLDETTLVLSYMSSAITTTEGGVVENDNGKNN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3097g00001 455 FunFam protein indeterminate-domain 12-like 36 104 - -
Gabi3097g00001 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 409 IPR031140 -
Gabi3097g00001 455 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Gabi3097g00001 455 MobiDBLite consensus disorder prediction 1 44 - -
Gabi3097g00001 455 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3097g00001 455 MobiDBLite consensus disorder prediction 188 224 - -
Gabi3097g00001 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Gabi3097g00001 455 MobiDBLite consensus disorder prediction 197 219 - -
Gabi3097g00001 455 MobiDBLite consensus disorder prediction 265 331 - -
Gabi3097g00001 455 Gene3D Classic Zinc Finger 119 194 - -
Gabi3097g00001 455 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Gabi3097g00001 455 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Gabi3097g00001 455 SMART c2h2final6 134 161 IPR013087 -
Gabi3097g00001 455 SMART c2h2final6 98 128 IPR013087 -
Gabi3097g00001 455 SMART c2h2final6 57 79 IPR013087 -
Gabi3097g00001 455 Coils Coil 345 400 - -
Gabi3097g00001 455 Gene3D Classic Zinc Finger 56 80 - -
Gabi3097g00001 455 MobiDBLite consensus disorder prediction 265 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3097g00001 Gabi-Chr3097 16843 19946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3097g00001 24 443 C2H2 Transcription Factor Family AT2G01940 57.870 1.22e-156 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3097g00001 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3097g00001 K25871 - gmx:100800187 701.434