Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3096g00006 ATGATGATCAATGAAATGAAAGCTGCAAGTGCTTTGGGAGCCAAGACAACACGAGCTTGTGATAGCTGTCTACGTGTAAGAGCACGGTGGTACTGTGCAGCTGATGATGCTTTTCTTTGCCATGGCTGTGATAACTTGGTTCACTCTGCAAACCAATTAGCTAGCAAGCATGAAAGGGTTAGGCTTCAAACTGCATCCTCTAAGGTAAAAGCACAAACATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCATAATAACAAGCACTTATTGGTGCAACAACGATCCAAAAAAGATGAAGAACAAGTGGTTTTCAATAACACTAGTTCCCTTCTTCATCCTCTTGTGCCTGAGCTTGGAAGTGAAGAACAACAACTTCTAGATGATAATGAGAATGAGGAGGAACAACAATTGCTTTGTCTTGTGCCTGTGTTTGACCCGTTTGATGCAGAGCTTTGCAGTTTATACAATGAAGTGAAGGATGAGGGATTGGACACCATCATGAAAAACGATGTTGTTGCTGGTGATGGTGAAGAGGAAGAAGAAGAAGTGTTTGATTTGGACAACTTTTCTCTCCCATCACATATGGAACTTGCTGAGTTTGATGCTGATGTTGAAACCTTACTTGGAAACGGATTTGATGAGGACTCATGTGGCCAAATGAAAGGATCAGAACTACTTGGTTGCAAAGAAGAAGATGAAATAGATGCATATGTTAATAGACTTGGAGATAAAGGTGCAATGGTAAAGGTTAAGGATGAAGAATTTGATGCTGATACAGCTTGTCATTTGGATTCAATTCTTGACATGAATAGCGAGGCCTTTGATTGGAATGTTGACTCAGAATCACTGGCGGTTGCTGCACAGGAGGAAGAGGAGGAAAAGGTGGCGGTTCCGGTGGCGGCGAGTTGTGGAGCCGGTAAACTGGGAACTAATAAGAAAATATTTTTGAGGCTAAACTATGAGGAGGTAATTACTGCTTGGGCTAGCCAAGGTTCTCCATGGATAACAGGAAGCCCTCGTAACTTCAACTTTGATAACTGCTGGCCTGATTATTTGGGTTTTAGTGGCGCAGATGTCCAATGCTCTTATGGGGAAGTAAGAAGCTTAAGGGGGAGTATAGATGAGGGAAGAGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACACGTTTATTTGCAAAGAAGATAAGGTATGAAGTAAGGAAGTTGAACGCAGAGAAAAGACCTAGAATGAAAGGTCGATTTGTCAAGAGAACATCCTTTGTTGGAGGCACTTCTAATTTGCCAGCTTAA 1305 0.4253 MMINEMKAASALGAKTTRACDSCLRVRARWYCAADDAFLCHGCDNLVHSANQLASKHERVRLQTASSKVKAQTWHSGFTRKARTPRHNNKHLLVQQRSKKDEEQVVFNNTSSLLHPLVPELGSEEQQLLDDNENEEEQQLLCLVPVFDPFDAELCSLYNEVKDEGLDTIMKNDVVAGDGEEEEEEVFDLDNFSLPSHMELAEFDADVETLLGNGFDEDSCGQMKGSELLGCKEEDEIDAYVNRLGDKGAMVKVKDEEFDADTACHLDSILDMNSEAFDWNVDSESLAVAAQEEEEEKVAVPVAASCGAGKLGTNKKIFLRLNYEEVITAWASQGSPWITGSPRNFNFDNCWPDYLGFSGADVQCSYGEVRSLRGSIDEGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGGTSNLPA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3096g00006 434 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gabi3096g00006 434 CDD Bbox1_BBX-like 19 62 - -
Gabi3096g00006 434 ProSiteProfiles CCT domain profile. 380 422 IPR010402 GO:0005515
Gabi3096g00006 434 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 424 - -
Gabi3096g00006 434 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Gabi3096g00006 434 Pfam CCT motif 380 422 IPR010402 GO:0005515
Gabi3096g00006 434 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3096g00006 Gabi-Chr3096 118436 121408 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3096g00006 9 422 C2C2-CO-like Transcription Factor Family AT1G25440 42.212 1.33e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi3096g00006 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3096g00006 - - gmx:100802113 488.034