Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3094g00017 ATGAATATGCTTAGAGAGAAGGAGCCCTTAAGCCATAACCAGAAGAACTACTTTTATAAAAATACTGTGTCCTCAGAGTACTTATTTCCCTATAAATTCTCTTCACCACAGCCACATGTTGAGGTTGAGAGGTTTCGACCATTCTCCGACCCTACCACATTAAAGAAGCTTAACCACAGTGCTAGTGAACGTGATCGTCGCAAGAAGATCAATCGCTCGATTGCTTCACTTGGTTCACTTATTCCTGTGGCAGATCAAACGAAAAAAATGAGCATTCCAAACAAAATTTCGCACGCCCTAAAATACATACCTCAGTTACAACACGAGGTGGAAGGACTAAGAAAGAAAAAAGAGGAGCTTCTATCCTGGATTTCACAGAAGGGAGATCCAGTGAAGAAACAATCTCAAAGGAAAATTTCCCAACTCAATTCTGTTTTTGTAGTTTCAGCAACTAGGCTCAACGTTAACGAGGCTGCTATTCAGATTTCATCTTATGAGGTTTACAAGACTCCACTATCCGAGATCTTGATATTTTTAGAGAATAATGGATTATTTCTGCTAAATTCTTCTTCCTCTGAAACCTTTGGAGGGAGGGTCTTCTATAACTTGCATTTACAGCCAGTTGGTTTTTCTCTTTGTGCCAATTGA 648 0.3951 MNMLREKEPLSHNQKNYFYKNTVSSEYLFPYKFSSPQPHVEVERFRPFSDPTTLKKLNHSASERDRRKKINRSIASLGSLIPVADQTKKMSIPNKISHALKYIPQLQHEVEGLRKKKEELLSWISQKGDPVKKQSQRKISQLNSVFVVSATRLNVNEAAIQISSYEVYKTPLSEILIFLENNGLFLLNSSSSETFGGRVFYNLHLQPVGFSLCAN 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3094g00017 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 122 IPR036638 GO:0046983
Gabi3094g00017 215 Gene3D - 50 144 IPR036638 GO:0046983
Gabi3094g00017 215 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 40 206 - -
Gabi3094g00017 215 FunFam Transcription factor ORG2 50 144 - -
Gabi3094g00017 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 106 IPR011598 GO:0046983
Gabi3094g00017 215 SMART finulus 60 112 IPR011598 GO:0046983
Gabi3094g00017 215 Pfam Helix-loop-helix DNA-binding domain 55 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3094g00017 Gabi-Chr3094 417513 419507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3094g00017 50 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 46.497 1.11e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3094g00017 Poty_coat 0.00041 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3094g00017 - - gmx:100803424 219.164