Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3094g00010 ATGGAATTTTCAAGAGAGAGAAAAAGAGAAATGAGCCCAAACGGTAGTTCCATCTCATCGGTGGCGAAACAAGCGGAGCAGCTGAGAATAGACGGCAACTCTTACTTCAAAAAAGACCGTTACGGCGCTGCCATCGATGCTTACACCGAGGCTATTACGCTGTGCCCTGATGTTGCGGTTTATTGGACGAATCGTGCTCTGTGCCATCTCAAACGCAATGATTGGGAGAGATTAGAGGAAGACTCTCGAAGAGCGATTCAGCTTGACAGCAATTCGGTTAAGGCACACTATATGTTGGGACTTGCATTACTACAAAAACAAGAATATGCCAAGGGAATCAGAGAATTGGAGAAGGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGTCCTATATGGTAGAACAAATATGGCAAGAGCTTGCAAATGCAAAATACCTAGAGTGGGAACGTTCGTCGTCCAAACGATCATGGGAATTGCAGAGCTTGAAAGAAACATGTGAGTCTGCGTTAAAGGAAAAACATTTTCTCGATTCCTCCCAAATGGAAGGATTTGTAGATGATGCCACTACTTACCATTTGGAACAATTAGAAGCTTTAGAAAGAGTCTTCAGTAAAGCTGCAGAGGATGACACACCTACTGAGGTGCCAGATTATCTATGCTGTAGAATCACACTTGATATTTTTCGTGATCCTGTAATCACTCCAAGTGGACTTACATACGAGAGAGCAGTGATCATTGAGCATCTTGAAAAGGTGGGTAATTTTGACCCAGTTACGCGGGAACCACTTGCTCCATCACAGCTAGCACCAAACTTGGCCATTAAGGAAGCGGTTCAGGCATTTTTGGAAAAACATGGGTGGGCCTACAAGGTAGATTAA 879 0.4414 MEFSRERKREMSPNGSSISSVAKQAEQLRIDGNSYFKKDRYGAAIDAYTEAITLCPDVAVYWTNRALCHLKRNDWERLEEDSRRAIQLDSNSVKAHYMLGLALLQKQEYAKGIRELEKALDLGRGANPKSYMVEQIWQELANAKYLEWERSSSKRSWELQSLKETCESALKEKHFLDSSQMEGFVDDATTYHLEQLEALERVFSKAAEDDTPTEVPDYLCCRITLDIFRDPVITPSGLTYERAVIIEHLEKVGNFDPVTREPLAPSQLAPNLAIKEAVQAFLEKHGWAYKVD 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3094g00010 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 13 290 IPR045200 GO:0000209|GO:0061630
Gabi3094g00010 292 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3094g00010 292 Pfam Tetratricopeptide repeat 84 124 - -
Gabi3094g00010 292 SMART tpr_5 93 126 IPR019734 GO:0005515
Gabi3094g00010 292 SMART tpr_5 25 58 IPR019734 GO:0005515
Gabi3094g00010 292 SMART tpr_5 59 92 IPR019734 GO:0005515
Gabi3094g00010 292 SUPERFAMILY RING/U-box 207 289 - -
Gabi3094g00010 292 SUPERFAMILY TPR-like 23 143 IPR011990 GO:0005515
Gabi3094g00010 292 Gene3D Tetratricopeptide repeat domain 17 182 IPR011990 GO:0005515
Gabi3094g00010 292 ProSiteProfiles U-box domain profile. 214 288 IPR003613 GO:0004842|GO:0016567
Gabi3094g00010 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 291 IPR013083 -
Gabi3094g00010 292 SMART Ubox_2 218 281 IPR003613 GO:0004842|GO:0016567
Gabi3094g00010 292 Pfam Tetratricopeptide repeat 32 57 IPR019734 GO:0005515
Gabi3094g00010 292 Pfam U-box domain 215 287 IPR003613 GO:0004842|GO:0016567
Gabi3094g00010 292 ProSiteProfiles TPR repeat profile. 25 58 IPR019734 GO:0005515
Gabi3094g00010 292 CDD RING-Ubox_CHIP 215 285 IPR045202 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3094g00010 18 291 U-box Gene Family AT3G07370 67.636 8.49e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3094g00010 K09561 - gmx:100796519 480.33