Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3094g00008 ATGAAAGACGTCGACGACCACCAAAACGACACCTTACGATCACTAGACTTTCAAAATCTCAAAGTCATCTCCGCCGTGGGGCGCGGCGCCAAGGGTATCGTGTTCCTCGCGAAAACCGGTGACCGGTCTTCGAACGAGTGTGTGGCTCTGAAAGTGATCTCAAAAGCTCTGATTCTTCAGAAGAATGCGAAGACCAACAAAAACGACGACGAAGGTTCTGGCGAGTACAAGAGGGTGTCGTTTGAACAGCAAGTGCTACGTCGTTTTGATCACCCACTTCTGCCGCGTTTGCAAGGGGTTTTGGAAACCGAGAAAATCGTTGGGTTCGCCATTGACTACTGCCACGGTGGCAGCCTCCATTCTCTTAGAAAGAAACAGACTGAGAAAATGTTTGCTGATGATACCATCAGGTTTTACGCTGTGGAATTGGTCCTCGCATTGGAGTATTTGCACCATTTGGGAATAGTATACAGAGATTTGAAGCCAGAGAATGTGATGATCCAAGAAAACGGTCACATAATGCTCGTCGATTTCGATCTCTCCACGAAGTTGAACCCTAAACTCGCTCAATCACTGAGTCGCGACTCGTCGGCGAGTCGTAACTCGTTGACGGAGAAACACATGAGTAAGCGACGACTCTTACGGCTCTACAGTTACTGTAACTCGGGCATCTCGCCGTGTGACTCGGACTCGGAGCCTCAACCCGTGATCAACTCAGCGCGGAGGACCGAGTCGGACTCGGTTGAGAAATCGAACTCGTTCGTCGGAACGGAAGAGTATGTGGCACCTGAAATTGTATCTGGAAAGGGTCACGGTTTTGGTGTTGATTGGTGGTCATTCGGCGTCGTTTTGTACGAGTTGCTATATGGAACGACGCCGTTTAGGGGAGATAATCGGAAAGAAACGTTTTTCCGGATTTTGACGAAGGAACCGGAGCTGACGGGGGAGAAGACGGCGTTAAGGGATTTGATTGGGAGATTGCTGGAAAAAGATCCTGACCGTCGGATCCAGGTGGATGAAATCAAGGGCCACGATTTCTTCAGAGGAGTTAAGTGGGACATGGTGTTGCAAATAGCAAGGCCTCCTTATATTCCTCGAAATGAGGTTGAGGACACGGTTGGGTTTAATAAAAAAGATGTAGAGTTGTTTGTCCATGAGGTTTTTTTCCCCAGTAGTCATGATGATGATGGAGAGAAAAATAAAAAGGTGGAAGAAAAAAAGGATAATGGGGAGAATAATAAGATGGTGTGGGTTGACAAGTTCAAGTTGAGTACTCACAGTCCCACTGACAATGAAGATTTTTCAATTTTTTGA 1314 0.4726 MKDVDDHQNDTLRSLDFQNLKVISAVGRGAKGIVFLAKTGDRSSNECVALKVISKALILQKNAKTNKNDDEGSGEYKRVSFEQQVLRRFDHPLLPRLQGVLETEKIVGFAIDYCHGGSLHSLRKKQTEKMFADDTIRFYAVELVLALEYLHHLGIVYRDLKPENVMIQENGHIMLVDFDLSTKLNPKLAQSLSRDSSASRNSLTEKHMSKRRLLRLYSYCNSGISPCDSDSEPQPVINSARRTESDSVEKSNSFVGTEEYVAPEIVSGKGHGFGVDWWSFGVVLYELLYGTTPFRGDNRKETFFRILTKEPELTGEKTALRDLIGRLLEKDPDRRIQVDEIKGHDFFRGVKWDMVLQIARPPYIPRNEVEDTVGFNKKDVELFVHEVFFPSSHDDDGEKNKKVEEKKDNGENNKMVWVDKFKLSTHSPTDNEDFSIF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3094g00008 437 FunFam Serine/threonine-protein kinase OXI1 249 366 - -
Gabi3094g00008 437 Gene3D Transferase(Phosphotransferase) domain 1 118 187 - -
Gabi3094g00008 437 SUPERFAMILY Protein kinase-like (PK-like) 18 381 IPR011009 -
Gabi3094g00008 437 Pfam Protein kinase domain 22 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3094g00008 437 Pfam Protein kinase domain 249 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3094g00008 437 ProSiteProfiles AGC-kinase C-terminal domain profile. 348 437 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi3094g00008 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Gabi3094g00008 437 ProSiteProfiles Protein kinase domain profile. 20 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3094g00008 437 Gene3D Phosphorylase Kinase; domain 1 20 117 - -
Gabi3094g00008 437 SMART serkin_6 20 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3094g00008 437 PANTHER FLIPPASE KINASE 1-RELATED 14 372 - -
Gabi3094g00008 437 Gene3D Phosphorylase Kinase; domain 1 367 377 - -
Gabi3094g00008 437 Gene3D Transferase(Phosphotransferase) domain 1 247 366 - -
Gabi3094g00008 437 FunFam Serine/threonine-protein kinase OXI1 118 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3094g00008 Gabi-Chr3094 193056 195094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3094g00008 13 414 AGC Kinase Gene Family AT3G25250 58.867 2.50e-154 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi3094g00008 Pkinase 1.9e-31 CL0016