Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3092g00024 ATGGGTAGGTCACCATGCTGTGAGAAGGTGGGGTTGAAAAAAGGGCCATGGACTCCGGAGGAAGACCAAAAGCTCATGGCTTATATTGAACAATTTGGCCATGGAAGCTGGCGTGCATTGCCTGCTAAAGCTGGCCTTCAAAGATGTGGGAAGAGCTGCAGACTGAGGTGGACTAACTACCTCCGACCTGATATAAAAAGAGGAAAGTTCAACTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCCCTTCTTGGAAACAGGTGGTCAGCAATAGCGGCTCAACTGCCCAAAAGAACCGACAATGAGATCAAGAACTATTGGAACACACACCTCAAGAAAAGGCTAACAAGAATGGGGATAGACCCTGCAACCCACAAACCAAAAACCGATGTCCTTGGTGGCTCCGGGAGCTGCCAATCAAATGATGCAGCCAACTTGAGCCACATGGCTCAGTGGGAGAGTGCTCGTCTCGAAGCTGAAGCTAGATTGGTCAGAGAATCCAAGTTGCAAGTTCAGAACCAGCTTGGATCCTCTTCCTCATCACCATCACCATCATCATCAACAACAACAACAAAAGACAACAACAACAACAAGATGATGATGCAAACCATGTACGCCATGATGCTATCCACTCATGACAGCCTCGAGTCTCCAACGTCCACTTTGAGCTTCCCTGGAAGTACTACTCTGCTTCCTATCTCAACCACCACCAACACCAACACAAACACCAACACCAACACCATTGGATTATTCAATGAAAATTTACTTCCTCTCAACACCACTAATGCCATGATGGATCAGTTTATGAAAAGTAGTTCAGCCACATGTGAGAGTAGTAGTGAGCAATGGAAGTATTTAACTAAGCAGAACCAAGAAGCAGAGGTAGGTGAAAGGAGAATGGACAACACAATAATGTTGAACTTGCAAGACGACGATGACATCATGACGGCTGTGGAAGCATTTAGATCATGTGCAAGTTACGACAATAATAATATTGTTGTTCCTAGCACTGTCCTCGTCCAAGAAGGCCTCAATAATAATAATACTGAAGAAAACTTGGCTATCATCAACGGGAATGGAAGTTTCTGTAACGTGAACCTCGATGAGAATAAGCATTACTGGGATACCATACTTAATTTGGTGAATGATTCACTCTCTGGTTCCTCTGTCTTCTGA 1179 0.4453 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIEQFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPATHKPKTDVLGGSGSCQSNDAANLSHMAQWESARLEAEARLVRESKLQVQNQLGSSSSSPSPSSSTTTTKDNNNNKMMMQTMYAMMLSTHDSLESPTSTLSFPGSTTLLPISTTTNTNTNTNTNTIGLFNENLLPLNTTNAMMDQFMKSSSATCESSSEQWKYLTKQNQEAEVGERRMDNTIMLNLQDDDDIMTAVEAFRSCASYDNNNIVVPSTVLVQEGLNNNNTEENLAIINGNGSFCNVNLDENKHYWDTILNLVNDSLSGSSVF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3092g00024 392 CDD SANT 69 112 IPR001005 -
Gabi3092g00024 392 MobiDBLite consensus disorder prediction 171 198 - -
Gabi3092g00024 392 Gene3D - 13 66 - -
Gabi3092g00024 392 Gene3D - 69 116 - -
Gabi3092g00024 392 SMART sant 66 114 IPR001005 -
Gabi3092g00024 392 SMART sant 13 63 IPR001005 -
Gabi3092g00024 392 CDD SANT 16 61 IPR001005 -
Gabi3092g00024 392 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3092g00024 392 FunFam MYB-related transcription factor 13 66 - -
Gabi3092g00024 392 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3092g00024 392 FunFam MYB transcription factor 68 129 - -
Gabi3092g00024 392 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3092g00024 392 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3092g00024 392 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3092g00024 392 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 267 - -
Gabi3092g00024 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3092g00024 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3092g00024 392 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3092g00024 Gabi-Chr3092 353635 355663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3092g00024 1 239 MYB Transcription Factor Family AT3G01140 65.863 6.05e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3092g00024 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3092g00024 K09422 - gmx:100809025 457.218