Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3092g00022 ATGGACACAAAGCCACAGCAAGAAATGGCAGAAGAAGAAGAGTTTATGCAACAGCTTAGATCCAAAGCAACAGAGCTTTTCATCAGAGAAGAATGGAAGGACTCCATTGATGCATATTCTCAATTCATCACCCTCTGCACCCACCAAATCTCTCGTACCCATATACACACTGACCCAAATCACCTCCAAAAGCTTCGCAGATCATTCTGCATAGCTCTCTGCAACCGTGCTGAAGCAAGGTCAAGGTTGAGGCTTTTCCACTGCGCCTTGCAAGATTGTGATCATGCTTTGGAAGTGGATGCCACCCATTTCAAGACCCTTGTGTGCAAAGGTAAGGTCTTGCTTAGCCTCAATAGGTACTCCATGGCTATGGAGTGCTTCAGAATCGCAATGCTTGACCCTCAAGCTGGTGGAAACTCGGAATGCCTTGATGGGTACTTGGAGAAATGCAAAAAGTTTGATTTTTTGTCAAGGACAGGGTCTTTGGATCTCTCAGACTGGGTTGCAAATGGGTTCCGAGGAAAGGCACCGGAACTTGCTGAGTACATTGGTGCAGTGCAGATAAGAAAATCTGAGATCAGTGGGCGTGGACTGTTTGCAACTAAGAACATTGATGCAGGGTCATTGATCTTGGTCACCAAGGCAATAGCCATGGAGAGGAGTATATTGGCAGGGAAAGATTTGACTGAGGATGCCCAGTTAGTGATGTGGAAGAATTTCATTGATAAAGTTGTGGACTTTGCTAGAAAATGTCATAAAACAAGGGATTTGGTTGGTAAATTGTCAAGTGGGGAAAATGAGGATGGACTTGAGGTGCCTGATATAGATCTCTTTAGGCCTGAGAATATGGAGAACATGGAGTTAAGCGAGGAGATTGATATGAATAAGTTACTGGCCATATTGGATGTTAATTCTCTTACTGAGGATGCAGTTTCAGCCAATGTGTTGAGGAAGAATAATGATTGTTATGGTGTTGGGTTGTGGTTGCTCCCTTCCTTCATCAACCATTCTTGTTGTCCCAATGCAAGGCGCTTGCATGTAGGGGACTACTTGATAGTTCATGCTTCTAAAGATTTGAAGGCTGGTGAAGAGATCACATTTGCATATTTTGACCCTTTGTTTGTGTTGAACAAGAGAAAGGAGGATTCATTGACATGGGGGATTCATTGCAAGTGTAAGAGATGCAAGTTTGAGGGGGAAATCTTCTCCAAACAAGAGATAAAAGAGATTGAGATTGGTCTTGAAAGAGGTATGGATGTGGGTGGTGTGGTGTATAAATTAGAGGAGCAGATGAAGAGATGGAAGGTGAGGGGGAAAGAGAAAGCCTATTTGAGGGCATCATTTTGGTCTGCATATTCAGAGGCTTATAAGTCAGATAGGTCAATGAAGAGGTGGGGAAGGAGGATTCCTGCATTGGATGCTGTGGTTGATAGCATCATAGATGTAGTGGGAGGTGATCACAGGTTACTTAAGATCTTGATGGAGGAGTTGAAGAAAAATGGTGGTGGCCTTGTGAAGATGGAGAAAGCTTTCAAGTTGGCAAGAGAGGTGTATGGCAAGGTGGTGAAAAAGCAAGCAATGAGGACACTTCTTGAGCTATGCATTGGTGATTGA 1614 0.4374 MDTKPQQEMAEEEEFMQQLRSKATELFIREEWKDSIDAYSQFITLCTHQISRTHIHTDPNHLQKLRRSFCIALCNRAEARSRLRLFHCALQDCDHALEVDATHFKTLVCKGKVLLSLNRYSMAMECFRIAMLDPQAGGNSECLDGYLEKCKKFDFLSRTGSLDLSDWVANGFRGKAPELAEYIGAVQIRKSEISGRGLFATKNIDAGSLILVTKAIAMERSILAGKDLTEDAQLVMWKNFIDKVVDFARKCHKTRDLVGKLSSGENEDGLEVPDIDLFRPENMENMELSEEIDMNKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLIVHASKDLKAGEEITFAYFDPLFVLNKRKEDSLTWGIHCKCKRCKFEGEIFSKQEIKEIEIGLERGMDVGGVVYKLEEQMKRWKVRGKEKAYLRASFWSAYSEAYKSDRSMKRWGRRIPALDAVVDSIIDVVGGDHRLLKILMEELKKNGGGLVKMEKAFKLAREVYGKVVKKQAMRTLLELCIGD 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3092g00022 537 SUPERFAMILY TPR-like 14 131 IPR011990 GO:0005515
Gabi3092g00022 537 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 3 532 - -
Gabi3092g00022 537 SMART set_7 184 376 IPR001214 GO:0005515
Gabi3092g00022 537 Pfam SET domain 195 369 IPR001214 GO:0005515
Gabi3092g00022 537 Gene3D SET domain 277 399 IPR046341 -
Gabi3092g00022 537 SMART tpr_5 104 136 IPR019734 GO:0005515
Gabi3092g00022 537 SMART tpr_5 70 103 IPR019734 GO:0005515
Gabi3092g00022 537 SMART tpr_5 16 49 IPR019734 GO:0005515
Gabi3092g00022 537 SUPERFAMILY SET domain 185 396 IPR046341 -
Gabi3092g00022 537 ProSiteProfiles SET domain profile. 184 370 IPR001214 GO:0005515
Gabi3092g00022 537 CDD SET_SMYD 298 395 - -
Gabi3092g00022 537 Gene3D Tetratricopeptide repeat domain 6 152 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3092g00022 Gabi-Chr3092 268893 270506 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3092g00022 SET 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3092g00022 - - mtr:11446296 852.432