Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3092g00021 ATGGAAGGCAGAACAAGCTCTGAACTCCCCCCTGGCTTTAGGTTTCATCCAACCGATGAGGAACTAATCGTTTATTACCTTTGTAACCAAGCCACATCAAAGCCATGCCCTTCATCTATCATCCTAGAAATGGATATCTATAAATTTGATCCATGGGAATTACCTGATAAATCAGAGTTTGGAGAGAATGAATGGTATTTCTTTAGCCCCCGAGAAAGGAAGTACCCAAATGGGGTAAGGCCTAATCGAGCAACAGTGTCAGGGTATTGGAAGGCTACTGGCACAGACAAGGCAATCTATAGTGGATCTAAGCATATTGGGGTGAAGAAATCTTTGGTCTTTTACAAGGGTAAGCCACCAAAGGGGTTCAAGACTGATTGGATTATGCATGAGTATCGATTGGTTGAATCAAAAATGCAAACTAGTAGGAAAATTGGGTCCATGAGGCTGGATGACTGGGTCTTGTGCAGGATCTATAAGAAGAAGAACATTGGAAAAGCATTGGAGCAAAAAGTTGAGTACCCAATAGTCCAAACTACTAATCTCACTGCTGCAAATAATGATGGTGAACAGAAAATGATGAACCTTCCAAGGACTTGTTCCCTCACTTATCTTTTGGATATGGATTACTCAGGTCCAATTTTATCTGATGGATCCTACTACTCAACCTTTGATTTTCAAATTAACACTGCCAATATTGGAGTAGACCCTTTTGTGAAACCTCAGCCAGTTGAAATGACTAACCATTATGCAGCAGATTCAGAAAAGTACCAAGTGAAACAGAGTAGCACCATCAACCAGCCCATGCTTGTGAAGCAAGTGCATGATCTGCTAGGATATGAGTATGACCAACAAGAAACAACAAGAGCTTGGATTGTCTAG 882 0.4116 MEGRTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPSSIILEMDIYKFDPWELPDKSEFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKSLVFYKGKPPKGFKTDWIMHEYRLVESKMQTSRKIGSMRLDDWVLCRIYKKKNIGKALEQKVEYPIVQTTNLTAANNDGEQKMMNLPRTCSLTYLLDMDYSGPILSDGSYYSTFDFQINTANIGVDPFVKPQPVEMTNHYAADSEKYQVKQSSTINQPMLVKQVHDLLGYEYDQQETTRAWIV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3092g00021 293 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Gabi3092g00021 293 FunFam NAC transcription factor 18 165 - -
Gabi3092g00021 293 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 247 - -
Gabi3092g00021 293 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Gabi3092g00021 293 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Gabi3092g00021 293 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3092g00021 Gabi-Chr3092 260277 261730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3092g00021 1 225 NAC Transcription Factor Family AT1G69490 63.983 1.51e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3092g00021 NAM 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3092g00021 - - gmx:100785110 476.478