Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3092g00016 ATGGGCAGGGTAAAGCTAAAGATAAAGAGGCTGGAGAATACCAATGGCCGCCAGGCAACATATGCTAAAAGGAAGAATGGAATCATGAAAAAAGCTACTGAGTTATCTATACTTTGCGATATAGATATTATACTTCTCATGTTCTCACCAACTGGAAAGCCTTCATTATGCAGGGGGAGGCGCAGTAACTTCGAGGAGGTTATTGCAAAGTTTGCTCAACTAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAAAGTCTTGAGGCACTAAAGAAAACATTTAAGAAGTTAGATCACGATGTGAATATACAAGAATTTCTGGGTACGAGTAGTCAAACTATTGAGGACCTTAGTAATCAAGCTAGGCTATTACGGACTCAAATTTCTGAAATCCATGAAAGATTAAGTCATTGGGCCGAGTTTGATAAAATAAGCAGTGTGGAGCAATTGGGACAGATGGAAAATTCACTAAGGGAGTCAATTAATGAAATTCGAACCCGTAAGGAAAATACAAAAAAGCAACAACTTGTTTCGCTGCAATGCAATAACCAGTTCAATGAAATGAATATTCCCTTCAGAATGAGTGCAGAGCAGCATCTGCAACCTCTAGCATGGATTGCTAATGGTGACAGCCAAAATATAGTTTTACCTGAGGACTCAAACATATTTCTCCACAAAGATGTAGAGGGATCAGCAAGTTCATCTTTTGGGAGTTACGCTAGTTATCTTGGCTCAAGTAGCAAAACCGATATTTCTAACTCCGGGCAAGAAAATGGTGTCCTTAGTGACTTGAGCAGTACTGCTCCTATGAGACTTCAATTCAACGGGCAGTTTCCATACATGCCATACAATTTTAACTTAATGAATAATTTGAAGTTCCAACCAGCTGCAGAGATCAACCCACATGAAAACCCTGTAGATTATCATATTAATGGAAGCTTTGAAGCCCCTAGGCCGGGTTATGACTCTAACCACCATGGATGGGCTTCCACATCAGGACCTTGTGCTGTTACTATGTTTGATGAGCATTTGTATGCCCAGGCAAGTTTCACCAAAGCGCACTTTGGCGTCACATAG 1077 0.4067 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPTGKPSLCRGRRSNFEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLRTQISEIHERLSHWAEFDKISSVEQLGQMENSLRESINEIRTRKENTKKQQLVSLQCNNQFNEMNIPFRMSAEQHLQPLAWIANGDSQNIVLPEDSNIFLHKDVEGSASSSFGSYASYLGSSSKTDISNSGQENGVLSDLSSTAPMRLQFNGQFPYMPYNFNLMNNLKFQPAAEINPHENPVDYHINGSFEAPRPGYDSNHHGWASTSGPCAVTMFDEHLYAQASFTKAHFGVT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3092g00016 358 Coils Coil 77 97 - -
Gabi3092g00016 358 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
Gabi3092g00016 358 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Gabi3092g00016 358 CDD MADS 2 54 - -
Gabi3092g00016 358 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gabi3092g00016 358 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3092g00016 358 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gabi3092g00016 358 Coils Coil 114 134 - -
Gabi3092g00016 358 Coils Coil 154 174 - -
Gabi3092g00016 358 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Gabi3092g00016 358 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3092g00016 358 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi3092g00016 358 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3092g00016 358 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3092g00016 Gabi-Chr3092 212717 216717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3092g00016 1 347 Type I MADS-box Gene Family AT2G03060 49.602 6.16e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi3092g00016 SRF-TF 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3092g00016 - - gmx:100811701 599.356