Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3092g00014 ATGAAGGCATGGCCAGCAAGTCTTGTATACACATCATCGTCAACTTCCTCCTCTTCTTATTCTTCTTCTACTTCTCCTTCAATGGGAATGGTTTATGCAGACTTGGGTTCTCTATCCCTTTGTTCCAACTATGGTGTTTCTTCATCTCAAGATTGCTATGTCTCCAAGAGCTTTGTGATGGAAAACGGGGGTACTACAAGCTGGGCATTGCCATTTGTGAGGGAATGCCTTGGAAGAAGCTTTGAGGAACACCCTAACAGTGATGTTGTTGTGGAGGGTAAAGGGTCTGATTGTAGTGGTGGGGCTGGGGAAAACAGTGACAAGATTAATCATAATGCTAGATTTAATGAAGAGAACCCTAATGAGAATTCTGTGACTGGCAAAGAGGCAGACACGGGACATTCCAAGCTATGTGCAAGAGGACATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGGCCTCAGAACTGGAACCTGATAGCTGAAAAGTTAGAAGGAAGATCAGGCAAAAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCGAGGATCAATAGGAGAGCATTCACTGAAGAAGAGGAAGAGAGGCTAATGCAAGCACATAGGATTTATGGTAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCTGTCAAGAATCACTGGCATGTTATAATGGCCAGAAAGTACAGAGAACAATCCAGTGCTTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGAAGAATGGAGGAAAATACAAGCTTTGTCTCTAGAGACACAGCCACAACAGGGACAGAACCACCACCCTATTGTCTCGATCTTCCAATTGGAGGAGGACTCAGCAATAACATGGCTAGTTTCCCATATGCATCTTTCCATGGAACTAGTGGTGGGGTTGAGTATGGCTTGAATGGTTCACCCCACATGACTGTTGGGAAAGAAGCAATCTCAAGTAACAAGCAGGCCCCTCCTCATATTGGCTTGTATGCTCAACCGACACCACTTGATTTCTTCTCTGGTGGTAGAAGCAATGACATGGTGGGGGAGTATTATAGCCAAACAAGACAGTGGGATAGGCCAAGTGATACACATCCTCATTCTCATCATCAACAATCTGGTTTTTACCCTCATCATCATCCCCAATATGTGATGCTAATGCAACAACAAGAGGCAAACAATCACAATTTTCACAGTTTCTCAAATTCCACAGCATCAAGAGCACAGAGATTGGCCAGTGAACCTTCACTATCATCAGTGGCAGAACACAGAGATCAAGCCCTGAACAGTGACCCCCCAGATGCAATTCCACCTCCATTTATTGACTTCCTTGGGGTAGGAGCCACATGA 1383 0.4512 MKAWPASLVYTSSSTSSSSYSSSTSPSMGMVYADLGSLSLCSNYGVSSSQDCYVSKSFVMENGGTTSWALPFVRECLGRSFEEHPNSDVVVEGKGSDCSGGAGENSDKINHNARFNEENPNENSVTGKEADTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRMEENTSFVSRDTATTGTEPPPYCLDLPIGGGLSNNMASFPYASFHGTSGGVEYGLNGSPHMTVGKEAISSNKQAPPHIGLYAQPTPLDFFSGGRSNDMVGEYYSQTRQWDRPSDTHPHSHHQQSGFYPHHHPQYVMLMQQQEANNHNFHSFSNSTASRAQRLASEPSLSSVAEHRDQALNSDPPDAIPPPFIDFLGVGAT 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3092g00014 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 241 IPR017930 -
Gabi3092g00014 460 ProSiteProfiles Myb-like domain profile. 187 237 IPR001005 -
Gabi3092g00014 460 MobiDBLite consensus disorder prediction 408 447 - -
Gabi3092g00014 460 CDD SANT 143 184 IPR001005 -
Gabi3092g00014 460 SMART sant 191 239 IPR001005 -
Gabi3092g00014 460 SMART sant 139 188 IPR001005 -
Gabi3092g00014 460 CDD SANT 194 234 IPR001005 -
Gabi3092g00014 460 Pfam Myb-like DNA-binding domain 140 186 IPR001005 -
Gabi3092g00014 460 Pfam Myb-like DNA-binding domain 192 235 IPR001005 -
Gabi3092g00014 460 FunFam MYB transcription factor 193 265 - -
Gabi3092g00014 460 Gene3D - 193 264 - -
Gabi3092g00014 460 Gene3D - 140 191 - -
Gabi3092g00014 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 186 IPR017930 -
Gabi3092g00014 460 FunFam MYB transcription factor 140 191 - -
Gabi3092g00014 460 MobiDBLite consensus disorder prediction 116 130 - -
Gabi3092g00014 460 MobiDBLite consensus disorder prediction 366 388 - -
Gabi3092g00014 460 MobiDBLite consensus disorder prediction 408 436 - -
Gabi3092g00014 460 SUPERFAMILY Homeodomain-like 140 233 IPR009057 -
Gabi3092g00014 460 PANTHER MYB PROTEIN-RELATED 128 376 - -
Gabi3092g00014 460 ProSiteProfiles Myb-like domain profile. 140 186 IPR001005 -
Gabi3092g00014 460 MobiDBLite consensus disorder prediction 96 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3092g00014 Gabi-Chr3092 179142 181106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3092g00014 133 257 MYB Transcription Factor Family AT1G69560 85.827 1.22e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3092g00014 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3092g00014 K09422 - vvi:100253313 542.347