Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3092g00012 ATGTCGGAGGCTATAAAGCTGTTTGGGAGAACAATTTCGCTGCCACTCATCCCCAATGACCCTCCTGCACCTGCTACTCATCCTTCATCTTCCTCTTCACCGCGCGAAGTGAACTCTGCAACACAACATGAAGCAGAGGAACCATCAAGGAAAGAACTCACCTCAGTACATGATGATGATGCCTCTCATCAAACCACAGATAATTTAAAATCTCCTACAACATCTTCTGGCATATTTGAGAATCCTAAGACTCCCTCAGCTGAAACAGAGAATTCATTACCGAAATCCTCTACAAACGGAGAACAAAGTGAGACTAGTGCTTCAGAAGAAAAAACTCCAAAGAAACCTGACAAGGTACTTCCGTGCCCGCGCTGCAATAGCATGGACACGAAATTCTGTTATTATAACAATTACAATGTCAATCAGCCCCGTCATTTCTGCAAGAAATGTCAAAGATACTGGACTGCAGGAGGAACAATGAGAAATGTGCCTGTAGGCGCTGGTCGCCGCAAGAACAAGAACTCTTGTGCCTCACATTATCGTCACATAATGATGCCGGAGGCACTTCAAGCAGCTAAACTCAATGCCCCCAATGGATTACATCATGCTGTTTTGAGAAATGGAGCAGCTGTCTTGACCTTTGGTCCAGATTCTCCCCTCTGTGATAGCATGGCTTCTGCATTGAACATTGCTGAGAAAACTCAAAGTTGTGTTCTAAATGGGTTTCATGCACCTGAGCCGAATACTTTTGTTTCCTATGGTAGGGAAGTTGATGAGGATGATCACTCTATTGGAGTTTCTGTTACAACTTCAACTTCATCAGAGAGGAGAGGCCATACTGGCTCACTTGAATCAGTGGATAAAAGAATTGAAGGTTTACCTCCTCATTTTCCCTACTTCCCAAGTTCACCCTGGCCTTATCCTCCAAATTCGGCACAGTGGAATTCCGCAATGCCTCCTCCTGCATTTTTCCCTGCAGGATATCCTTTATCATTCTATACCACACCTGCATATTGGGGTTGTATGCCACAATCCTGGAATATATCATGTATATCACCCCAGTCTTCTGTTAACCACTCTGTCTCTTCCCCTAGTTCTGGCCCCAATTCACCTACTTTGGGAAAACACTCGAGGGATGGGAATATCATCACCACAACCAACTCACAGAAAGAAAAGTCAGATATAGAGCATAACAATTCAGAAAGCAACGTCTTGATTCCCAAGACTCTTAGAATTGATGATCCTGGTGAAGCTGCAAAGAGTTCCATATGGTCAACACTAGGGATCAAGAATGACAAGGTCTATTCTCTAAATGGAGGAGGACTTTTCAAGGCATTTCCATCCAAGGGTAACGACATGAATCACATGGTTGAAGCATCACCGATGCTGCATGCTAACCCTGCAGCTTTATCGCGGTCTCTTACCTTCCATGAGGGAACCTAA 1443 0.4428 MSEAIKLFGRTISLPLIPNDPPAPATHPSSSSSPREVNSATQHEAEEPSRKELTSVHDDDASHQTTDNLKSPTTSSGIFENPKTPSAETENSLPKSSTNGEQSETSASEEKTPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNSCASHYRHIMMPEALQAAKLNAPNGLHHAVLRNGAAVLTFGPDSPLCDSMASALNIAEKTQSCVLNGFHAPEPNTFVSYGREVDEDDHSIGVSVTTSTSSERRGHTGSLESVDKRIEGLPPHFPYFPSSPWPYPPNSAQWNSAMPPPAFFPAGYPLSFYTTPAYWGCMPQSWNISCISPQSSVNHSVSSPSSGPNSPTLGKHSRDGNIITTTNSQKEKSDIEHNNSESNVLIPKTLRIDDPGEAAKSSIWSTLGIKNDKVYSLNGGGLFKAFPSKGNDMNHMVEASPMLHANPAALSRSLTFHEGT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3092g00012 480 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Gabi3092g00012 480 MobiDBLite consensus disorder prediction 66 106 - -
Gabi3092g00012 480 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Gabi3092g00012 480 MobiDBLite consensus disorder prediction 357 389 - -
Gabi3092g00012 480 MobiDBLite consensus disorder prediction 13 121 - -
Gabi3092g00012 480 Pfam Dof domain, zinc finger 117 174 IPR003851 GO:0003677|GO:0006355
Gabi3092g00012 480 MobiDBLite consensus disorder prediction 357 401 - -
Gabi3092g00012 480 PANTHER CYCLIC DOF FACTOR 2 3 479 IPR045174 GO:0003700|GO:0006355
Gabi3092g00012 480 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3092g00012 Gabi-Chr3092 154781 158320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3092g00012 73 478 C2C2-Dof Transcription Factor Family AT5G39660 46.190 5.29e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi3092g00012 zf-Dof 4.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3092g00012 - - gmx:100813315 642.884