Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3092g00009 ATGGATCACCTGCAAAATGTGCAAAATCAAAGTATGCGTTTGGTTATGTCCACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCATCAACGATTCAACGAGGCAGTTAATCAGCTTGGAGGTGCAGAAAAGGCAACTCCAAAGAATCTTATGAGGGTGATGGGGATTCCAGGACTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAGCAACTAGAAACCTGCTCTGACAACAAACAAGAAGATTACATAGAAATCAAGAGCAGTGATGGTCATTGCAGCAGAGAAATCAGTGTTGGGACACATAATAAGATGACTGAAAGCTTGAAGATTACTCAGGCTCTCCAAATGCAAATGGAAGTACAAAAGAAACTCAATGAACAAATTGAGGTGCAGAAACATTTGCAACTCCGAATTGAAGCTCAAGGGAAGTACTTACAATCAGTACTAATGAAGGCACAGGAAACACTCGCAGGATACAGTTCTTCCACAGGAGGTGTAGAACTTGCAAAAGCTGAACTTTCTCAGCTAGTTTCAATAATCAACAATGCCTGCCCAAGTTCTCCAATTTCAGAACTAACAGAAACAAGAGGGTTCAGTTTAAACTGTGGGGAGAGGAAACAAAATAGAGGAACTATGTGCTCACTGGAAAGTTCTTTGACATCATCTGAAAGCTCTGGGTCAAAAGAAGAAAAGAGGCACATGGATGAGGCAGAGAACCTACAAAAGTCTAATAGTATTTCATTTGAATTGCCATTAATGGTCACTCACCCAGAAGATAAAGCATTCAAGGGAGATACAAGTGATGTAGAAAGTGGGAGAAAGATAAGGGCAGATTCTGATGGTGGCTGCGTTGATCAACCATCTGGAAAGAGATTTTGCAACAAGTTGAGGAAATCTGAATTGTCAGAAATGCTTGACTTGAACAGCCACTATCAGAGAGACATTGACTCAAGTTCCAAAGAAATAGATTTAAATTGCACTTCTAGCTTTTGGGGACAATGA 1032 0.4089 MDHLQNVQNQSMRLVMSTDAKPRLKWTPELHQRFNEAVNQLGGAEKATPKNLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLETCSDNKQEDYIEIKSSDGHCSREISVGTHNKMTESLKITQALQMQMEVQKKLNEQIEVQKHLQLRIEAQGKYLQSVLMKAQETLAGYSSSTGGVELAKAELSQLVSIINNACPSSPISELTETRGFSLNCGERKQNRGTMCSLESSLTSSESSGSKEEKRHMDEAENLQKSNSISFELPLMVTHPEDKAFKGDTSDVESGRKIRADSDGGCVDQPSGKRFCNKLRKSELSEMLDLNSHYQRDIDSSSKEIDLNCTSSFWGQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3092g00009 343 Pfam Myb-like DNA-binding domain 23 74 IPR001005 -
Gabi3092g00009 343 MobiDBLite consensus disorder prediction 221 250 - -
Gabi3092g00009 343 FunFam Myb family transcription factor 20 78 - -
Gabi3092g00009 343 MobiDBLite consensus disorder prediction 272 292 - -
Gabi3092g00009 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Gabi3092g00009 343 MobiDBLite consensus disorder prediction 272 290 - -
Gabi3092g00009 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 251 IPR044848 GO:0003700
Gabi3092g00009 343 MobiDBLite consensus disorder prediction 235 249 - -
Gabi3092g00009 343 Pfam MYB-CC type transfactor, LHEQLE motif 119 165 IPR025756 -
Gabi3092g00009 343 Gene3D - 20 78 - -
Gabi3092g00009 343 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3092g00009 Gabi-Chr3092 117837 119680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3092g00009 12 301 G2-like Transcription Factor Family AT1G69580 54.902 4.90e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3092g00009 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3092g00009 - - gmx:100805252 485.337