Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3091g00002 ATGGCTCTTAGTTCGGCTCCTGCAGTGTCTATTGAACCAGTTGTTTGCCCTCAAGCAGTGATTGAGTGGTACAAATTAACAGGATCAACAGATTACAAGCGAGGTTGTAGGAAAAGAGATCTGTCCTTAAAAGCAAAGCAACATCTATGTGCTTTGGGTTGGAATTTGTGGTACATTGCTAAGCAAGGTCGATGGGAATTGCGTTATACATCACCCAATGGCAGGAACCATATTTCTCTCAGAAGTGCATGCGAAAGATGCATAGAAGAGGGAGGTTGTGGGCCTGAAAATGTTCCCTTGATTCAGAAAACAAAGGGTCTTCAAGTTAAGCGTGATCATGATCATGATCCTTCAACTACAGCCATTTCATCTTCTGCACAGCCACAAGTGCAACCAAGAAAATGCAAGAAACGAAGAGCAAGAGCGCAGTCATTTGATGATGATGAGCTTGATCAGGCCTCTTCCACTGCTGTCATTCCATCTTCTGCACAATCACATGAGGTATCAAGAAAATGCAAGAAACCGAGGGCTGAGCCAAGAAAGTGCAAGAAAAGGCAAAGGGAGTCATTTGATGATGGTGATGATGATGAGTGGAATCCGATGGGTCAATCTCAATCCACGAGTGAGCTTGATCAGGCCTCTTCCACTGCTGTCATTTCATCTTCTGCACAATCCCAGGAGGTACCAAGAAAATGCAAGAAACCGAGGGCTGATCCAAGAAAATGCAAGAAACTGAGGTCTGAGCCAAGAAAATGCAAGAAACCGAGGGTGAGGCATGGGGATGAGGCACAAAGTTCTTCAAATCCTGGTACAGTTAACTCTTTGTTGATAGACACCAACGTGGTACTTTCAGAATCCAAGGTTTTGGGCCCCACTAACTTTGAGGCTCATGCTGGTTGTACAAAGCAACTTCCATCAACTAGTATCTTCTTGGAAGATGGAAGGTCACTGTTGGATTGCCAAAGGGAAGCATTGAGTACTTCACAACAAAAAAATCACGATGTTGTTATGCAGAGAGACAGTGTTTATAAAGACAATAATGACAGCGTCTGTTCCATATGTCGTTATGGTGGTGAATTGATACTCTGTGATAGATGTCCATCCTCATTCCATCTCACTTGTCTTGGTCTTGAACAAGTTCCTGATGGTGATTGGTTTTGCCCACCATGTTGCTGCAAAATATGCAACCGAGCAAAATACAGAGAAGATTGTGCAGATAATGTGGATTGCAGTATTCTCGTTTGTGATCAATGTGAGCACAAATACCACATTGGCTGCCTAAAGACTAGAGGCTTTAGCAGTAACTTGGAAAACAGCCCTAATAAGAATTGGTTCTGCAATTCTGATTGTGAGAACATATTTTGCAGTCTACAGAAGCTGATAGGAAAAGCAATTCCCGTGGGGGGTGCAGATAATCTTACTTGGATGATGTTGAAGACCTTGAAAAGTGATAACCTTGGAGATCTTACTTCTGAAGACCTTGAGCGCTTGAGTCAAATTGAAAGCAAGCTAAGTGTGGCTCTTGGAGTATTCCGTGAGTGTTTTGATCCCGTTATTGATCCTCTCACTGGGAGAGATATCATATCAGATATTATGTCTAGCAGAGGTTCAGAACTTGATGGTTCCAACTTTCGTGGGTTCTACACGGTGATTTTGGAGAGGAATGACCAAGTGATTTCTGCTGCCACCATAAGGATTTATGGTCAGAAGGTTGCTGAGCTACCATTTGTTGCCACTGGGAGGATGTTTCGAAGACTTGGAATGTGTAGTATCTTGATGAATGAGCTTGAGAAGCATTTGACTCACTTGGGAATTGAGAGGATGATCTTGCCTTCCTCTCCTAGTGTGATAGACACTTGGACAAACTCATTCGGCTTTGCAAGGATGACAGATTTGGATAAGTCTCAATTTCTTGACTATACTTTTGTAGACTTCCAAGACACCATTATGTGCCACAAATTATTGATGAAGCCTTCAATCAAACGTTTTGATGGTTATGTGGCAACTGGAAGTTCAAGCATTCCTGGGTTTGAGTCAAGTGTGGCTGGAAGTTCAAGTGCTGATGATGCTCAACCGTTGCAGCAGCACCAACATGCCAGACTTCAGTGGGAAGCAGAAAATATACAAGATTAG 2133 0.4294 MALSSAPAVSIEPVVCPQAVIEWYKLTGSTDYKRGCRKRDLSLKAKQHLCALGWNLWYIAKQGRWELRYTSPNGRNHISLRSACERCIEEGGCGPENVPLIQKTKGLQVKRDHDHDPSTTAISSSAQPQVQPRKCKKRRARAQSFDDDELDQASSTAVIPSSAQSHEVSRKCKKPRAEPRKCKKRQRESFDDGDDDEWNPMGQSQSTSELDQASSTAVISSSAQSQEVPRKCKKPRADPRKCKKLRSEPRKCKKPRVRHGDEAQSSSNPGTVNSLLIDTNVVLSESKVLGPTNFEAHAGCTKQLPSTSIFLEDGRSLLDCQREALSTSQQKNHDVVMQRDSVYKDNNDSVCSICRYGGELILCDRCPSSFHLTCLGLEQVPDGDWFCPPCCCKICNRAKYREDCADNVDCSILVCDQCEHKYHIGCLKTRGFSSNLENSPNKNWFCNSDCENIFCSLQKLIGKAIPVGGADNLTWMMLKTLKSDNLGDLTSEDLERLSQIESKLSVALGVFRECFDPVIDPLTGRDIISDIMSSRGSELDGSNFRGFYTVILERNDQVISAATIRIYGQKVAELPFVATGRMFRRLGMCSILMNELEKHLTHLGIERMILPSSPSVIDTWTNSFGFARMTDLDKSQFLDYTFVDFQDTIMCHKLLMKPSIKRFDGYVATGSSSIPGFESSVAGSSSADDAQPLQQHQHARLQWEAENIQD 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3091g00002 710 MobiDBLite consensus disorder prediction 199 228 - -
Gabi3091g00002 710 SUPERFAMILY FYVE/PHD zinc finger 336 393 IPR011011 -
Gabi3091g00002 710 Pfam PHD-finger 350 392 IPR019787 -
Gabi3091g00002 710 MobiDBLite consensus disorder prediction 678 699 - -
Gabi3091g00002 710 Pfam Acetyltransferase (GNAT) family 548 626 IPR000182 GO:0016747
Gabi3091g00002 710 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 489 652 IPR016181 -
Gabi3091g00002 710 PANTHER PHD FINGER PROTEIN 12 15 684 IPR042163 GO:0003714|GO:0045892
Gabi3091g00002 710 MobiDBLite consensus disorder prediction 235 253 - -
Gabi3091g00002 710 Pfam Tify domain binding domain 287 324 IPR032308 -
Gabi3091g00002 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 391 IPR013083 -
Gabi3091g00002 710 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 484 661 IPR000182 GO:0016747
Gabi3091g00002 710 MobiDBLite consensus disorder prediction 149 166 - -
Gabi3091g00002 710 CDD NAT_SF 550 610 - -
Gabi3091g00002 710 Gene3D - 509 660 - -
Gabi3091g00002 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 453 IPR013083 -
Gabi3091g00002 710 SMART PHD_3 350 391 IPR001965 -
Gabi3091g00002 710 SMART PHD_3 392 450 IPR001965 -
Gabi3091g00002 710 MobiDBLite consensus disorder prediction 105 272 - -
Gabi3091g00002 710 ProSiteProfiles Zinc finger PHD-type profile. 348 393 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3091g00002 Gabi-Chr3091 5445 7577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3091g00002 287 603 PHD Transcription Factor Family AT5G58610 44.479 6.07e-81 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3091g00002 Acetyltransf_1 9e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3091g00002 - - qsa:O6P43_015988 549.666