Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3089g00047 ATGACAAAGCCGAAGATAGAAATAAAGAAGATTGACAACATTGCAGCTAGGCAGGTGACTTTTTCTAAGAGGAAGAGAGGGCTTTTCAAGAAGGCTCGGGAGCTTTCAACTCTTTGTGATGCTGAGATAGCTCTCATAGTCTTTTCTGCTTCGAGCAAGCTCTTCGAATTCGCTAGCTCAAGTGTGGAGCAGGTGGTTGAAAGGTACAATCTGCATCCAAGCACTGAAAGATTACAACACTCATCTGAAGAGCTGCAGGTAAGATCCTCTTTCCACTTCGTGCTGCGCAAGGAAGTGGCAGATAGGACTCTTGAACTGAGGAAGCTGAACGGGGAAGATCTGCAAGGATTAAAAATTCGAGAATTACAGAAACTAGAGAAACTACTAGGAAAAGGCTTGACCCGTGTTTCAAAAGCAAAGGATGAAAGACTTGTAAATGATATCAAAGCGCTCAAGAAAAAGGGAGTCGAAATAGCGCAAGAGAACCAACGACTGAAACAGATACAAGGTCTTGCAAACGATCAAGGGCAGTCATCTAAGTCAACCATGATTTGCAGCACATCAAATCGTGCTAAAGACTCTGATAATCACGATGATTCTCTCAACTTGGGGTTGCCTTTGTTCAAATGA 630 0.4302 MTKPKIEIKKIDNIAARQVTFSKRKRGLFKKARELSTLCDAEIALIVFSASSKLFEFASSSVEQVVERYNLHPSTERLQHSSEELQVRSSFHFVLRKEVADRTLELRKLNGEDLQGLKIRELQKLEKLLGKGLTRVSKAKDERLVNDIKALKKKGVEIAQENQRLKQIQGLANDQGQSSKSTMICSTSNRAKDSDNHDDSLNLGLPLFK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3089g00047 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi3089g00047 209 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Gabi3089g00047 209 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Gabi3089g00047 209 FunFam Transcription factor, MADS-box 13 82 - -
Gabi3089g00047 209 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3089g00047 209 MobiDBLite consensus disorder prediction 170 199 - -
Gabi3089g00047 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 5 169 - -
Gabi3089g00047 209 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Gabi3089g00047 209 MobiDBLite consensus disorder prediction 170 190 - -
Gabi3089g00047 209 Pfam K-box region 94 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi3089g00047 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi3089g00047 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi3089g00047 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi3089g00047 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi3089g00047 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3089g00047 Gabi-Chr3089 403407 415060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3089g00047 1 206 MADS-box Gene Family AT2G22540 47.479 2.23e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi3089g00047 K-box 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3089g00047 - - ahf:112786765 222.246