Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3089g00033 ATGTTGCAGGGAAGAAGTTTGAACCTTTTGAGGCCTCAGAACTCTGCTATGGCAAGTTCTCATTTATCAACAGCTGCTGAGCTATTTTCAAGACAACGTAATCCCCCGAGGGTTCCAAATCTAATTGGGGGCAGTTTTGTCGACTCAAAATCGTTGACTTTCATTGATGTCATAAACCCTGCAACACAAGAAGTTGTTTCACAAGTTCCTTTGACTACGGATGAAGAGTTTAAAGCTGCGGTATCTGCAGCAAAGAAGGCATTTTCATCATGGCGTAACACTCCAATCACAAGACGCCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCAGAGATATGGATAAACTTGCAATGAATGTGACCACTGAACAAGGAAAGACGCTAAAGGATGCTCAAGGAGATGTATTCCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGGGAGTATTTTTCCAATGTATCACGGGGAATTGATACATTCAGCATTATAGAACCGCTTGGTGTTTGTGCTGGTATTTGTCCGTTCAACTTTCCTGCAATGATTCCCTTATGGATGTTCCCAATGGCAGTTACCTGCGGCAATACCTTTATTCTAAAGCCATCAGAGAAAGATCCAGGTACTTCTGTAATGCTTGCAGAATTGGCAATAGAGGCTGGTTTGCCCGAGGGTGTCTTAAATATAGTTCATGGAACTCATGATATTGTCAATGCTATTTGTGATCATGACGACATCAAAGCCGTATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCAAGAGCAGCAGCTAAAGGAAAACGTGTTCAGTCTAATATGGGGGCCAAAAATCATGCAGTTGTCATGCCTGATGCAAGTTTTGATGCTACTGTAAATGCTTTAATTGCTGCGGGTTTTGGTGCTGCTGGTCAAAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTTGGAGGCTCAAAACTGTGGGAAAGTAAACTTGTGGAACGTGCCAAAGCTCTTAAAGTAAATGCTGGAACTGAACCTGATGCAGACCTTGGTCCAGTAATTAGCAGACAGGCAAAGGAGCGAATACACAGATTAATTCAATCTGGGTTTGAAAGCGGTGCAAGACTAGTGCTTGATGGAAGAAATATAGTGGTCCCCGGATATGAATCTGGCAATTTTATTGGACCAACCATCTTATCAGATGTCACTGCCAACATGGAGTGCTACCAGGAGGAGATTTTTGGTCCAGTTCTTCTTCTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTATCAACGAAAACAAGTATGGAAATGGTGCTACTATATTTACTACATCTGGCGTGGCTGCAAGGAAATTTCAGACAGAGATTGAGGCAGGGCAGGTGGGCATCAACGTTCCAATTCCTGTTCCTTTACCCTTTTTTTCATTTACTGGCAACAAGGCATCATTTGCAGGCGATCTCAATTTCTATGGCAAGGCAGGGGTTAACTTTTATACACAGATCAAAACAGTAACACAGCAGTGGAAGGATTCAGCTAGCGGGAGCAAGGTTAACATGTCAATGCCAACTTCTCAACAATCTTGA 1602 0.4301 MLQGRSLNLLRPQNSAMASSHLSTAAELFSRQRNPPRVPNLIGGSFVDSKSLTFIDVINPATQEVVSQVPLTTDEEFKAAVSAAKKAFSSWRNTPITRRQRVMLKFQELIRRDMDKLAMNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYFSNVSRGIDTFSIIEPLGVCAGICPFNFPAMIPLWMFPMAVTCGNTFILKPSEKDPGTSVMLAELAIEAGLPEGVLNIVHGTHDIVNAICDHDDIKAVSFVGSNVAGMHIYARAAAKGKRVQSNMGAKNHAVVMPDASFDATVNALIAAGFGAAGQRCMALSTVVFVGGSKLWESKLVERAKALKVNAGTEPDADLGPVISRQAKERIHRLIQSGFESGARLVLDGRNIVVPGYESGNFIGPTILSDVTANMECYQEEIFGPVLLLMEADSLEEAINIINENKYGNGATIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTVTQQWKDSASGSKVNMSMPTSQQS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3089g00033 533 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 40 514 IPR010061 GO:0004491
Gabi3089g00033 533 SUPERFAMILY ALDH-like 33 515 IPR016161 GO:0016491
Gabi3089g00033 533 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 42 289 - -
Gabi3089g00033 533 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 283 483 - -
Gabi3089g00033 533 Pfam Aldehyde dehydrogenase family 46 510 IPR015590 GO:0016491
Gabi3089g00033 533 CDD ALDH_F6_MMSDH 38 514 IPR010061 GO:0004491
Gabi3089g00033 533 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 5 530 IPR010061 GO:0004491
Gabi3089g00033 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 57 491 IPR016162 GO:0016491
Gabi3089g00033 533 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 308 319 IPR016160 GO:0016491
Gabi3089g00033 533 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 283 483 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3089g00033 Gabi-Chr3089 269256 276977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3089g00033 2 498 Aldehyde Dehydrogenase Gene Family AT2G14170 80.885 0.0 826