Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3089g00028 ATGCCATTTAGATTATCCCTGCATCCAACATCCTCGGCTATGGCGGCATGTCAATCCTCGGCTAAGCGTATTCATCCACTTCCTTATTTGAACATAACCATAATAATTTTGTCTTTCATAATTCCACAGGCAAGTCTATTAGACTTCAGCTATCAACAATTTCTCTACAAGGAGGATACCTTGAATTTTGAAGGAGATGTTAATCCTGACAAGGGAGTCCTCCAACTCACCGAGTCTAAGAAAGACAGTATTGGCAGAGTCACATATTACAAGAAGCTTCATCTTTGGGACATGAATTCAAGAAAACTCACAGATTTCACTTCCAATTTCTCCTTCATTATCAAAGGAGCAAACAACACCAGTCATGGAGATGGCATCACATTCTTCCTTGCCAGCCCCAACTTTCCACTTCCTGTCCCACCAGATGGAACTGGTATTGGCCTTGTTAGCGGTCGACAAATGCAAGATCCAAATTACCCTAATCAGCATCCATTTGTAGCAGTGGAGTTTGACACCTTTTGGAATTCATTTGATCCTCAATATGACCATGTAGGTGTCGATATTAAAACCGTGAGGAGTCCTTTCACTGCAGAGTGGTTTAGTATTAAGGATGGTAGAGTATATGATGCCCAAATTAGCTATAATTCTTCTTCACACAATTTAAGTGTTATCTTCACAGGATATAAGGGTAACATCTCAGTCAAGCAAGACTACTATCACGTAGTTGACTTGAGACAGGTTCTACCGGATTGGGTTGAGTTTGGCTTCTCTTCAGCAACAGGATTGTTATATGATGAGATACATACACTTTGCTCATGGTCTTTCAATTCGAATCTGGACTTGGAAGTGCATAAGGACGAAAGCAAGAAGAGGCTGGTGATTGGGCTGTGCATTGGTTCAGCTGTTTTAGTTGTTGGTTTGGTATTAGCTTGGCTTATGATGTTGAAAAGGATGAGAAGAGGCAAGGAAGATGGCGTGGAACTTACTATGGACGATGATTTTGAAAGAGGGACCGGACCTAAGAAATTTTCCTATGATGAACTTGTTAGAGCAACTAACAACTTTGCAGAGGAACAGAAGCTCGGACAAGGAGGTTTTGGGGGAGTCTACAAAGGATTTATAAGAGAGTTGGATGATTATGTTGCAGTTAAAAGGGTATCACAGGGATCTAGACAGGGTGTGAAAGAGTATGCCTCTGAAGTTAAGATCATTAGTCAACTGAGGCACAGGAATTTGGTGCAGCTCCTTGGATGGTGCCACAAGAAAAATGATCTTCTACTTGTCTATGAGTTCATGTCAAATGGAAGCCTAGATTCCCATCTTTTTGGAGGCAGAAGTCTCCTAACATGGGCAGCAAGGTATAACATTGCTGGAGGCCTAGCATCAGCATTATTGTACCTACATGAAGAATGGGAGCAATGTGTGATTCATAGGGACATCAAATCAAGTAATGTTATGTTGGATTCAAATTTCAATACAAAGCTTGGTGACTTTGGATTAGCCAGGCTGGTAGATCATGAGAAAGGGTCACAAACAACAATTTTAGCTGGAACATTAGGATATATGGCACCTGAATCTGCTACAAGAGGCAAAGCTAGTAGAGAATCCGATGTATACAGTTTTGGTGTTGTTGCTTTGGAGATAGCCTGTGGAAGAAAACCAATTGTACTAAAAGCCAGGGAAGAACACATCCTTTTGGTGGAATGGGTTTGGGAACTCTATGGCATGGGTAATATACTAGAAGCAGCTGATCCAAGATTATGTGGAGACTTTGCTGAGCAAGAAATGGAAAGGTTAATGATAGTTGGCTTATGGTGTGCTCACCCTGATTATATTTTGAGGCCTGCAATTAGGCAAGCAGTGCATGTTCTTAACTTTGAAGCTCCATTGCCTAATCTCCCATCAAAGATGCCCAAACCCACCTATATTGCTCCTTCTATTACTGCTCCTGAATCTTCAAGCTCTCCATCGTCTGATGTTAATCCTTTTGGATTTACTCAAACCGAGCCTTTAACTAGTAGCTCTTGCTCCTCACAATCCAGCACATCTGCAGCACTTCTGCACACATACTAA 2073 0.4149 MPFRLSLHPTSSAMAACQSSAKRIHPLPYLNITIIILSFIIPQASLLDFSYQQFLYKEDTLNFEGDVNPDKGVLQLTESKKDSIGRVTYYKKLHLWDMNSRKLTDFTSNFSFIIKGANNTSHGDGITFFLASPNFPLPVPPDGTGIGLVSGRQMQDPNYPNQHPFVAVEFDTFWNSFDPQYDHVGVDIKTVRSPFTAEWFSIKDGRVYDAQISYNSSSHNLSVIFTGYKGNISVKQDYYHVVDLRQVLPDWVEFGFSSATGLLYDEIHTLCSWSFNSNLDLEVHKDESKKRLVIGLCIGSAVLVVGLVLAWLMMLKRMRRGKEDGVELTMDDDFERGTGPKKFSYDELVRATNNFAEEQKLGQGGFGGVYKGFIRELDDYVAVKRVSQGSRQGVKEYASEVKIISQLRHRNLVQLLGWCHKKNDLLLVYEFMSNGSLDSHLFGGRSLLTWAARYNIAGGLASALLYLHEEWEQCVIHRDIKSSNVMLDSNFNTKLGDFGLARLVDHEKGSQTTILAGTLGYMAPESATRGKASRESDVYSFGVVALEIACGRKPIVLKAREEHILLVEWVWELYGMGNILEAADPRLCGDFAEQEMERLMIVGLWCAHPDYILRPAIRQAVHVLNFEAPLPNLPSKMPKPTYIAPSITAPESSSSPSSDVNPFGFTQTEPLTSSSCSSQSSTSAALLHTY 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3089g00028 690 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Gabi3089g00028 690 SUPERFAMILY Protein kinase-like (PK-like) 339 646 IPR011009 -
Gabi3089g00028 690 SMART serkin_6 355 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3089g00028 690 FunFam L-type lectin-domain containing receptor kinase IX.1 340 431 - -
Gabi3089g00028 690 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3089g00028 690 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Gabi3089g00028 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 45 280 IPR013320 -
Gabi3089g00028 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Gabi3089g00028 690 FunFam Lectin-domain containing receptor kinase A4.3 432 644 - -
Gabi3089g00028 690 MobiDBLite consensus disorder prediction 644 690 - -
Gabi3089g00028 690 CDD STKc_IRAK 361 625 - -
Gabi3089g00028 690 MobiDBLite consensus disorder prediction 646 690 - -
Gabi3089g00028 690 Pfam Protein kinase domain 356 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3089g00028 690 Gene3D - 45 296 - -
Gabi3089g00028 690 CDD lectin_legume_LecRK_Arcelin_ConA 47 279 IPR001220 GO:0030246
Gabi3089g00028 690 PANTHER - 71 634 - -
Gabi3089g00028 690 ProSitePatterns Legume lectins beta-chain signature. 166 172 IPR019825 -
Gabi3089g00028 690 Gene3D Transferase(Phosphotransferase) domain 1 432 646 - -
Gabi3089g00028 690 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Gabi3089g00028 690 Pfam Legume lectin domain 47 289 IPR001220 GO:0030246
Gabi3089g00028 690 ProSitePatterns Legume lectins alpha-chain signature. 248 257 IPR000985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3089g00028 Gabi-Chr3089 227658 229889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3089g00028 33 642 Receptor kinase-like Gene Family AT5G10530 46.688 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi3089g00028 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3089g00028 - - cam:101491058 783.867